RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 MORF4L1Q9UBU8 362 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 PRKAG2Q9UGJ0 569 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 RAPGEFL1Q9UHV5 662 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 DOCK1Q14185 1865 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 PLXNB2O15031 1838 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 TTC28Q96AY4 2481 aa17.32■□□□□ 0.36
PRPF39-204ENST00000553605 CDH23Q9H251 3354 aa17.32■□□□□ 0.36
PRPF39-204ENST00000553605 ZKSCAN1P17029 563 aaPredicted RBP17.32■□□□□ 0.36
PRPF39-204ENST00000553605 HMGCS2P54868 508 aa17.32■□□□□ 0.36
PRPF39-204ENST00000553605 RABL6Q3YEC7 729 aaPredicted RBP17.32■□□□□ 0.36
PRPF39-204ENST00000553605 TJAP1Q5JTD0 557 aa17.32■□□□□ 0.36
PRPF39-204ENST00000553605 ZNF280CQ8ND82 737 aa17.32■□□□□ 0.36
PRPF39-204ENST00000553605 TTYH1Q9H313 450 aaPredicted RBP17.32■□□□□ 0.36
PRPF39-204ENST00000553605 IL16Q14005 1332 aa17.31■□□□□ 0.36
PRPF39-204ENST00000553605 SLC5A1P13866 664 aa17.31■□□□□ 0.36
PRPF39-204ENST00000553605 DDX10Q13206 875 aaKnown RBP17.31■□□□□ 0.36
PRPF39-204ENST00000553605 KLHDC4Q8TBB5 520 aa17.31■□□□□ 0.36
PRPF39-204ENST00000553605 LPIN2Q92539 896 aa17.31■□□□□ 0.36
PRPF39-204ENST00000553605 TBC1D12O60347 775 aa17.3■□□□□ 0.36
PRPF39-204ENST00000553605 SMAD3P84022 425 aaKnown RBP17.3■□□□□ 0.36
PRPF39-204ENST00000553605 PDE3AQ14432 1141 aa17.3■□□□□ 0.36
PRPF39-204ENST00000553605 TBC1D2Q9BYX2 928 aa17.3■□□□□ 0.36
PRPF39-204ENST00000553605 DDX4Q9NQI0 724 aaKnown RBP17.3■□□□□ 0.36
PRPF39-204ENST00000553605 UTYO14607 1347 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 FANCIQ9NVI1 1328 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 PLA2G5P39877 138 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 ATN1P54259 1190 aaPredicted RBP17.29■□□□□ 0.36
PRPF39-204ENST00000553605 PICALMQ13492 652 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 CCL14Q16627 93 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 C9orf50Q5SZB4 431 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 ANKRD44Q8N8A2 993 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 GPRC5AQ8NFJ5 357 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 USP6NLQ92738 828 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 OSBPL5Q9H0X9 879 aaPredicted RBP17.29■□□□□ 0.36
PRPF39-204ENST00000553605 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.29■□□□□ 0.36
PRPF39-204ENST00000553605 MYH13Q9UKX3 1938 aa17.29■□□□□ 0.36
PRPF39-204ENST00000553605 RFX7Q2KHR2 1363 aa17.28■□□□□ 0.36
PRPF39-204ENST00000553605 SALL1Q9NSC2 1324 aa17.28■□□□□ 0.36
PRPF39-204ENST00000553605 PEX10O60683 326 aa17.28■□□□□ 0.36
PRPF39-204ENST00000553605 RGS2P41220 211 aa17.28■□□□□ 0.36
PRPF39-204ENST00000553605 IRX3P78415 501 aaPredicted RBP17.28■□□□□ 0.36
PRPF39-204ENST00000553605 SH3D19Q5HYK7 790 aa17.28■□□□□ 0.36
PRPF39-204ENST00000553605 FAM122AQ96E09 287 aa17.28■□□□□ 0.36
PRPF39-204ENST00000553605 P2RX7Q99572 595 aaKnown RBP17.28■□□□□ 0.36
PRPF39-204ENST00000553605 GNL3LQ9NVN8 582 aaKnown RBP17.28■□□□□ 0.36
PRPF39-204ENST00000553605 LOC285556D6RIA3 1793 aa17.28■□□□□ 0.36
PRPF39-204ENST00000553605 GAKO14976 1311 aa17.27■□□□□ 0.36
PRPF39-204ENST00000553605 FAM196BA6NMK8 535 aa17.27■□□□□ 0.36
PRPF39-204ENST00000553605 MAPK4P31152 587 aa17.27■□□□□ 0.36
PRPF39-204ENST00000553605 EXOSC9Q06265 439 aaKnown RBP17.27■□□□□ 0.36
PRPF39-204ENST00000553605 CCAR1Q8IX12 1150 aaKnown RBP17.27■□□□□ 0.36
PRPF39-204ENST00000553605 TXNRD2Q9NNW7 524 aa17.27■□□□□ 0.36
PRPF39-204ENST00000553605 MAST2Q6P0Q8 1798 aa17.26■□□□□ 0.35
PRPF39-204ENST00000553605 USP17L5A8MUK1 530 aa17.26■□□□□ 0.35
PRPF39-204ENST00000553605 RTP1P59025 263 aa17.26■□□□□ 0.35
PRPF39-204ENST00000553605 MORN1Q5T089 497 aa17.26■□□□□ 0.35
PRPF39-204ENST00000553605 DENND2AQ9ULE3 1009 aa17.26■□□□□ 0.35
PRPF39-204ENST00000553605 EYA2O00167 538 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 HOXA7P31268 230 aaPredicted RBP17.25■□□□□ 0.35
PRPF39-204ENST00000553605 CAP2P40123 477 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 HERVK_113P62684 666 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 Q3C1V9 767 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 GPR142Q7Z601 462 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 SLF2Q8IX21 1173 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 FAM163AQ96GL9 167 aaPredicted RBP17.25■□□□□ 0.35
PRPF39-204ENST00000553605 APBA2Q99767 749 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 PRKRIP1Q9H875 184 aaPredicted RBP17.25■□□□□ 0.35
PRPF39-204ENST00000553605 AS3MTQ9HBK9 375 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 RBPJLQ9UBG7 517 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 ATP11BQ9Y2G3 1177 aa17.25■□□□□ 0.35
PRPF39-204ENST00000553605 MYH2Q9UKX2 1941 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 TMEM265A0A087WTH1 108 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 DNM1LO00429 736 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 SEMA3EO15041 775 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 BTDP43251 543 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 PLEKHH3Q7Z736 793 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 DZIP1Q86YF9 867 aaKnown RBP17.24■□□□□ 0.35
PRPF39-204ENST00000553605 ZGPATQ8N5A5 531 aaKnown RBP17.24■□□□□ 0.35
PRPF39-204ENST00000553605 USP38Q8NB14 1042 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 LPAR1Q92633 364 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 BADQ92934 168 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 PORCNQ9H237 461 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 DDX20Q9UHI6 824 aaKnown RBP17.24■□□□□ 0.35
PRPF39-204ENST00000553605 LTBP2Q14767 1821 aa17.24■□□□□ 0.35
PRPF39-204ENST00000553605 MSCO60682 206 aa17.23■□□□□ 0.35
PRPF39-204ENST00000553605 ERVK-9P63128 1117 aa17.23■□□□□ 0.35
PRPF39-204ENST00000553605 ERVK-24P63145 666 aa17.23■□□□□ 0.35
PRPF39-204ENST00000553605 RRP1BQ14684 758 aaKnown RBP17.23■□□□□ 0.35
PRPF39-204ENST00000553605 MFSD14CQ5VZR4 134 aa17.23■□□□□ 0.35
PRPF39-204ENST00000553605 PRDM5Q9NQX1 630 aaPredicted RBP17.23■□□□□ 0.35
PRPF39-204ENST00000553605 TMOD4Q9NZQ9 345 aa17.23■□□□□ 0.35
PRPF39-204ENST00000553605 NPM3O75607 178 aaKnown RBP17.22■□□□□ 0.35
PRPF39-204ENST00000553605 CNGA1P29973 690 aa17.22■□□□□ 0.35
PRPF39-204ENST00000553605 BACE1P56817 501 aa17.22■□□□□ 0.35
PRPF39-204ENST00000553605 MTMR2Q13614 643 aa17.22■□□□□ 0.35
PRPF39-204ENST00000553605 EDC3Q96F86 508 aaKnown RBP17.22■□□□□ 0.35
PRPF39-204ENST00000553605 WDR18Q9BV38 432 aa17.22■□□□□ 0.35
PRPF39-204ENST00000553605 PHKA1P46020 1223 aa17.21■□□□□ 0.35
PRPF39-204ENST00000553605 MAP2K5Q13163 448 aa17.21■□□□□ 0.35
PRPF39-204ENST00000553605 GRIN2CQ14957 1233 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms