RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 METTL16Q86W50 562 aaKnown RBP18.54■□□□□ 0.56
SHMT2-204ENST00000553324 BRI3BPQ8WY22 251 aa18.54■□□□□ 0.56
SHMT2-204ENST00000553324 EDC3Q96F86 508 aaKnown RBP18.54■□□□□ 0.56
SHMT2-204ENST00000553324 TBC1D2Q9BYX2 928 aa18.54■□□□□ 0.56
SHMT2-204ENST00000553324 KCNH4Q9UQ05 1017 aa18.54■□□□□ 0.56
SHMT2-204ENST00000553324 GLRX3O76003 335 aaKnown RBP18.53■□□□□ 0.56
SHMT2-204ENST00000553324 PTPRAP18433 802 aa18.53■□□□□ 0.56
SHMT2-204ENST00000553324 CRACR2BQ8N4Y2 399 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-204ENST00000553324 GINM1Q9NU53 330 aa18.53■□□□□ 0.56
SHMT2-204ENST00000553324 PALD1Q9ULE6 856 aa18.53■□□□□ 0.56
SHMT2-204ENST00000553324 ZHX2Q9Y6X8 837 aa18.53■□□□□ 0.56
SHMT2-204ENST00000553324 AK9Q5TCS8 1911 aa18.53■□□□□ 0.56
SHMT2-204ENST00000553324 FKTNO75072 461 aa18.52■□□□□ 0.56
SHMT2-204ENST00000553324 EXOC6Q8TAG9 804 aa18.52■□□□□ 0.56
SHMT2-204ENST00000553324 ZNF296Q8WUU4 475 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-204ENST00000553324 ZFYVE28Q9HCC9 887 aa18.52■□□□□ 0.56
SHMT2-204ENST00000553324 CAP2P40123 477 aa18.51■□□□□ 0.55
SHMT2-204ENST00000553324 FASTKD5Q7L8L6 764 aaKnown RBP18.51■□□□□ 0.55
SHMT2-204ENST00000553324 KBTBD3Q8NAB2 608 aa18.51■□□□□ 0.55
SHMT2-204ENST00000553324 SAP30BPQ9UHR5 308 aaKnown RBP18.51■□□□□ 0.55
SHMT2-204ENST00000553324 AFG3L2Q9Y4W6 797 aa18.51■□□□□ 0.55
SHMT2-204ENST00000553324 MAST2Q6P0Q8 1798 aa18.5■□□□□ 0.55
SHMT2-204ENST00000553324 ZFYP08048 801 aaPredicted RBP18.5■□□□□ 0.55
SHMT2-204ENST00000553324 MX1P20591 662 aa18.5■□□□□ 0.55
SHMT2-204ENST00000553324 PKN2Q16513 984 aaKnown RBP18.5■□□□□ 0.55
SHMT2-204ENST00000553324 ANKRD23Q86SG2 305 aa18.5■□□□□ 0.55
SHMT2-204ENST00000553324 EHD4Q9H223 541 aa18.5■□□□□ 0.55
SHMT2-204ENST00000553324 ATP8A2Q9NTI2 1148 aa18.5■□□□□ 0.55
SHMT2-204ENST00000553324 TAOK2Q9UL54 1235 aa18.5■□□□□ 0.55
SHMT2-204ENST00000553324 FAM196BA6NMK8 535 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 BTBD19C9JJ37 291 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 POLR3DP05423 398 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-204ENST00000553324 ASNSP08243 561 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 CRHR2Q13324 411 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 DGKZQ13574 1117 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 TAF1CQ15572 869 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-204ENST00000553324 CTU1Q7Z7A3 348 aaKnown RBP18.49■□□□□ 0.55
SHMT2-204ENST00000553324 FAM43AQ8N2R8 423 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 DDRGK1Q96HY6 314 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 AS3MTQ9HBK9 375 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 SERPINB13Q9UIV8 391 aa18.49■□□□□ 0.55
SHMT2-204ENST00000553324 USP17L5A8MUK1 530 aa18.48■□□□□ 0.55
SHMT2-204ENST00000553324 SLURP2P0DP57 97 aa18.48■□□□□ 0.55
SHMT2-204ENST00000553324 ARHGEF6Q15052 776 aa18.48■□□□□ 0.55
SHMT2-204ENST00000553324 SMC5Q8IY18 1101 aa18.48■□□□□ 0.55
SHMT2-204ENST00000553324 R3HDMLQ9H3Y0 253 aa18.48■□□□□ 0.55
SHMT2-204ENST00000553324 MCM9Q9NXL9 1143 aa18.48■□□□□ 0.55
SHMT2-204ENST00000553324 A0A0G2JLL6 359 aaPredicted RBP18.47■□□□□ 0.55
SHMT2-204ENST00000553324 TSHZ3Q63HK5 1081 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 PRRT2Q7Z6L0 340 aaPredicted RBP18.47■□□□□ 0.55
SHMT2-204ENST00000553324 AMOTL1Q8IY63 956 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 LCORLQ8N3X6 602 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 ZNF280CQ8ND82 737 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 PI4K2BQ8TCG2 481 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 ERO1AQ96HE7 468 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 MCOLN1Q9GZU1 580 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 ARMT1Q9H993 441 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 DCP1AQ9NPI6 582 aaPredicted RBP18.47■□□□□ 0.55
SHMT2-204ENST00000553324 STAP2Q9UGK3 403 aa18.47■□□□□ 0.55
SHMT2-204ENST00000553324 OTOFQ9HC10 1997 aa18.46■□□□□ 0.55
SHMT2-204ENST00000553324 RNF113AO15541 343 aaKnown RBP18.46■□□□□ 0.55
SHMT2-204ENST00000553324 TLR2O60603 784 aa18.46■□□□□ 0.55
SHMT2-204ENST00000553324 MBD4O95243 580 aa18.46■□□□□ 0.55
SHMT2-204ENST00000553324 SP3Q02447 781 aa18.46■□□□□ 0.55
SHMT2-204ENST00000553324 TATDN1Q6P1N9 297 aa18.46■□□□□ 0.55
SHMT2-204ENST00000553324 APPBP2Q92624 585 aa18.46■□□□□ 0.55
SHMT2-204ENST00000553324 SLC45A1Q9Y2W3 748 aa18.46■□□□□ 0.55
SHMT2-204ENST00000553324 TRIM75PA6NK02 468 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 PDHXO00330 501 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 TICAM2Q86XR7 235 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 OTUD7AQ8TE49 926 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-204ENST00000553324 SDR42E1Q8WUS8 393 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 ABHD8Q96I13 439 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 WDR18Q9BV38 432 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 PUS7LQ9H0K6 701 aaKnown RBP18.45■□□□□ 0.54
SHMT2-204ENST00000553324 DNAJC18Q9H819 358 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 SALL3Q9BXA9 1300 aa18.45■□□□□ 0.54
SHMT2-204ENST00000553324 DOCK2Q92608 1830 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 IGHDP01880 384 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 GNAT2P19087 354 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 PLCD1P51178 756 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 PDE1AP54750 535 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 SPP2Q13103 211 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 MOGSQ13724 837 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 RRP1BQ14684 758 aaKnown RBP18.44■□□□□ 0.54
SHMT2-204ENST00000553324 CERKLQ49MI3 558 aaPredicted RBP18.44■□□□□ 0.54
SHMT2-204ENST00000553324 PARK7Q99497 189 aaKnown RBP18.44■□□□□ 0.54
SHMT2-204ENST00000553324 SLC4A4Q9Y6R1 1079 aa18.44■□□□□ 0.54
SHMT2-204ENST00000553324 MYO5AQ9Y4I1 1855 aaKnown RBP18.43■□□□□ 0.54
SHMT2-204ENST00000553324 CASP8AP2Q9UKL3 1982 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 NUCB1Q02818 461 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 SLC4A8Q2Y0W8 1093 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 SLFNL1Q499Z3 407 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 B4GALNT3Q6L9W6 998 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 GPAT2Q6NUI2 795 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 GIMAP6Q6P9H5 292 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 GADL1Q6ZQY3 521 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 CHD1LQ86WJ1 897 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 PROCA1Q8NCQ7 364 aaPredicted RBP18.43■□□□□ 0.54
SHMT2-204ENST00000553324 EVI5LQ96CN4 794 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms