RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TIGD1Q96MW7 591 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 KCND1Q9NSA2 647 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 INTS13Q9NVM9 706 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 SLAIN2Q9P270 581 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 KCNH3Q9ULD8 1083 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 IQSEC3Q9UPP2 1182 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-213ENST00000552720 SLC12A7Q9Y666 1083 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 MYH8P13535 1937 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 PATL2C9JE40 543 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 TPM4P67936 248 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 MYL5Q02045 173 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 SSRP1Q08945 709 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 PUM3Q15397 648 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 CPLX2Q6PUV4 134 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 USP49Q70CQ1 688 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 DZIP3Q86Y13 1208 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 TRMT44Q8IYL2 757 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 PDILTQ8N807 584 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 OXER1Q8TDS5 423 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 ERO1AQ96HE7 468 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 FEZ1Q99689 392 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 TEX13AQ9BXU3 409 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 BTG4Q9NY30 223 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 OGFRQ9NZT2 677 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 FAM205CA6NFA0 338 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 WTIPA6NIX2 430 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 BCAMP50895 628 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 FMR1Q06787 632 aaKnown RBP eCLIP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 NOSTRINQ8IVI9 506 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 DIS3L2Q8IYB7 885 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 LPIN2Q92539 896 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 UTP14AQ9BVJ6 771 aaKnown RBP8.63□□□□□ -1.03
LIMA1-213ENST00000552720 PCDHB6Q9Y5E3 794 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 TIAM2Q8IVF5 1701 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 MYH13Q9UKX3 1938 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 LRP5O75197 1615 aa8.63□□□□□ -1.03
LIMA1-213ENST00000552720 PHLPP1O60346 1717 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 A0A0G2JS52 829 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 FAM237AA0A1B0GTK4 181 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 hCG_1642624A0A1W2PR95 340 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 POLR2DO15514 142 aaKnown RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 CUTAO60888 179 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 FMNL1O95466 1100 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 AKNAD1Q5T1N1 836 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 UTP14CQ5TAP6 766 aaKnown RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 SUSD4Q5VX71 490 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 MFSD6Q6ZSS7 791 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 ADGRA1Q86SQ6 560 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 HOMER1Q86YM7 354 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 FAM177A1Q8N128 213 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 JMYQ8N9B5 988 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 ZNF397Q8NF99 534 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 NUP133Q8WUM0 1156 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 SHISA4Q96DD7 197 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 TMX1Q9H3N1 280 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 ST7Q9NRC1 585 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 ZNF446Q9NWS9 450 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 DNAI1Q9UI46 699 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 MYH14Q7Z406 1995 aaKnown RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 BCL9O00512 1426 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 PSDA5PKW4 1024 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 MMP1P03956 469 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 UQCRFS1P1P0C7P4 283 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 LIFRP42702 1097 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 TDO2P48775 406 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 MDM2Q00987 491 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 MAP3K12Q12852 859 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 VSTM4Q8IW00 320 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 KRI1Q8N9T8 703 aaKnown RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 SDR42E1Q8WUS8 393 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 MED15Q96RN5 788 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 L2HGDHQ9H9P8 463 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 SERTAD1Q9UHV2 236 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 FBXO2Q9UK22 296 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-213ENST00000552720 MAN1B1Q9UKM7 699 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 SLC4A4Q9Y6R1 1079 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 CASZ1Q86V15 1759 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 DOT1LQ8TEK3 1739 aa8.62□□□□□ -1.03
LIMA1-213ENST00000552720 IFNAR1P17181 557 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 CASP1P29466 404 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 ALX1Q15699 326 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 RTN1Q16799 776 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 CCDC93Q567U6 631 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 TRIM65Q6PJ69 517 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 OLFM4Q6UX06 510 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 TMEM139Q8IV31 216 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 ZNF34Q8IZ26 560 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 MORC2Q9Y6X9 1032 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-213ENST00000552720 MROH5Q6ZUA9 1318 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 TOP1P11387 765 aaKnown RBP8.61□□□□□ -1.03
LIMA1-213ENST00000552720 SLC5A1P13866 664 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 WTAPQ15007 396 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 EARS2Q5JPH6 523 aaKnown RBP8.61□□□□□ -1.03
LIMA1-213ENST00000552720 SAMD1Q6SPF0 538 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-213ENST00000552720 REXO1L1PQ8IX06 675 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 MPHOSPH8Q99549 860 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 GTPBP4Q9BZE4 634 aaKnown RBP8.61□□□□□ -1.03
LIMA1-213ENST00000552720 PLCH1Q4KWH8 1693 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 ZNF335Q9H4Z2 1342 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms