RNA–Protein interactions for RNA: ENST00000552003.1

SLC48A1-209, Transcript of solute carrier family 48 member 1, humanhuman

TSL 3

Gene SLC48A1, Length 882 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC48A1-209ENST00000552003 C11orf16Q9NQ32 467 aa13.03□□□□□ -0.32
SLC48A1-209ENST00000552003 BMP1P13497 986 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 DNAJB2P25686 324 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 MRPS5P82675 430 aaKnown RBP13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 DIXDC1Q155Q3 683 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 CCDC30Q5VVM6 783 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 ASCC2Q9H1I8 757 aaPredicted RBP13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 ZNF576Q9H609 170 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 PICK1Q9NRD5 415 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 CNNM1Q9NRU3 951 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 MORF4L1Q9UBU8 362 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 ATP11BQ9Y2G3 1177 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 CHMP3Q9Y3E7 222 aa13.02□□□□□ -0.33
SLC48A1-209ENST00000552003 GCLCP48506 637 aaPredicted RBP13.01□□□□□ -0.33
SLC48A1-209ENST00000552003 CCDC85BQ15834 202 aaPredicted RBP13.01□□□□□ -0.33
SLC48A1-209ENST00000552003 TBC1D22AQ8WUA7 517 aa13.01□□□□□ -0.33
SLC48A1-209ENST00000552003 KHSRPQ92945 711 aaKnown RBP eCLIP13.01□□□□□ -0.33
SLC48A1-209ENST00000552003 PRDM5Q9NQX1 630 aaPredicted RBP13.01□□□□□ -0.33
SLC48A1-209ENST00000552003 PDLIM7Q9NR12 457 aa13.01□□□□□ -0.33
SLC48A1-209ENST00000552003 FLRT1Q9NZU1 646 aa13.01□□□□□ -0.33
SLC48A1-209ENST00000552003 WDFY4Q6ZS81 3184 aa13□□□□□ -0.33
SLC48A1-209ENST00000552003 ZKSCAN1P17029 563 aaPredicted RBP13□□□□□ -0.33
SLC48A1-209ENST00000552003 Q3C1V9 767 aa13□□□□□ -0.33
SLC48A1-209ENST00000552003 NUDT12Q9BQG2 462 aa13□□□□□ -0.33
SLC48A1-209ENST00000552003 PRDM12Q9H4Q4 367 aa13□□□□□ -0.33
SLC48A1-209ENST00000552003 PRKAG2Q9UGJ0 569 aa13□□□□□ -0.33
SLC48A1-209ENST00000552003 HCN4Q9Y3Q4 1203 aa13□□□□□ -0.33
SLC48A1-209ENST00000552003 PLXNA1Q9UIW2 1896 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 DDTLA6NHG4 134 aaPredicted RBP12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 RRP1BQ14684 758 aaKnown RBP12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 TRIM60Q495X7 471 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 MORN1Q5T089 497 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 AKNAD1Q5T1N1 836 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 SLC39A5Q6ZMH5 540 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 PROCA1Q8NCQ7 364 aaPredicted RBP12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 TRPV1Q8NER1 839 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 RUNDC1Q96C34 613 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 RNPC3Q96LT9 517 aaKnown RBP12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 PORCNQ9H237 461 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 SPINK5Q9NQ38 1064 aaPredicted RBP12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 IFT57Q9NWB7 429 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 PNMA3Q9UL41 463 aa12.99□□□□□ -0.33
SLC48A1-209ENST00000552003 RFX7Q2KHR2 1363 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 CTNND1O60716 968 aaKnown RBP12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 PBX2P40425 430 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 HMGCS2P54868 508 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 TFF2Q03403 129 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 SPP2Q13103 211 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 SNX17Q15036 470 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 GJC2Q5T442 439 aaPredicted RBP12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 LINS1Q8NG48 757 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 P2RX7Q99572 595 aaKnown RBP12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 USP40Q9NVE5 1235 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 SUGT1Q9Y2Z0 365 aa12.98□□□□□ -0.33
SLC48A1-209ENST00000552003 FAM196BA6NMK8 535 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 DNM1LO00429 736 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 RGS3P49796 1198 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 CCDC57Q2TAC2 916 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 VGLL2Q8N8G2 317 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 LPAR1Q92633 364 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 TIFAQ96CG3 184 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 MYH16Q9H6N6 1097 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 DDX4Q9NQI0 724 aaKnown RBP12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 RBPJLQ9UBG7 517 aa12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 DDX20Q9UHI6 824 aaKnown RBP12.97□□□□□ -0.33
SLC48A1-209ENST00000552003 MAST3O60307 1309 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 FAM86C2PA6NEL3 165 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 GRXCR1A8MXD5 290 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 IGHA2P01877 340 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 PRDX5P30044 214 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 KCNQ1P51787 676 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 GPR142Q7Z601 462 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 VPS37DQ86XT2 251 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 SOCS4Q8WXH5 440 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 DNAAF4Q8WXU2 420 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 KAZALD1Q96I82 304 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 LRRFIP2Q9Y608 721 aaKnown RBP12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 ATAD5Q96QE3 1844 aa12.96□□□□□ -0.33
SLC48A1-209ENST00000552003 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 FRAT2O75474 233 aaPredicted RBP12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 GNAI1P63096 354 aa12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 LRRC24Q50LG9 513 aa12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 TAF7LQ5H9L4 462 aa12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 TRMT44Q8IYL2 757 aaKnown RBP12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 IDI2Q9BXS1 227 aa12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 MYH13Q9UKX3 1938 aa12.95□□□□□ -0.34
SLC48A1-209ENST00000552003 PRRC2BQ5JSZ5 2229 aaKnown RBP12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 RGS2P41220 211 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 MRE11P49959 708 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 FLIIQ13045 1269 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 SH3D19Q5HYK7 790 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 TMEM31Q5JXX7 168 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 ZNF280CQ8ND82 737 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 GAS2L1Q99501 681 aaPredicted RBP12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 APBA2Q99767 749 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 PBX4Q9BYU1 374 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 CXXC1Q9P0U4 656 aaPredicted RBP12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 ADAMTS8Q9UP79 889 aa12.94□□□□□ -0.34
SLC48A1-209ENST00000552003 NDUFB9Q9Y6M9 179 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms