RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-213ENST00000548421 RUFY3Q7L099 469 aa34.06■■■■□ 3.04
BRF1-213ENST00000548421 TACC3Q9Y6A5 838 aa34.06■■■■□ 3.04
BRF1-213ENST00000548421 ASTN2O75129 1339 aaPredicted RBP34.05■■■■□ 3.04
BRF1-213ENST00000548421 FGRP09769 529 aa34.05■■■■□ 3.04
BRF1-213ENST00000548421 NEK4P51957 841 aa34.05■■■■□ 3.04
BRF1-213ENST00000548421 ZSCAN29Q8IWY8 852 aaPredicted RBP34.05■■■■□ 3.04
BRF1-213ENST00000548421 KRT23Q9C075 422 aa34.05■■■■□ 3.04
BRF1-213ENST00000548421 MYH8P13535 1937 aa34.05■■■■□ 3.04
BRF1-213ENST00000548421 SH3BP5LQ7L8J4 393 aa34.04■■■■□ 3.04
BRF1-213ENST00000548421 INCENPQ9NQS7 918 aa34.04■■■■□ 3.04
BRF1-213ENST00000548421 DDTLA6NHG4 134 aaPredicted RBP34.03■■■■□ 3.04
BRF1-213ENST00000548421 RPS6KB1P23443 525 aa34.03■■■■□ 3.04
BRF1-213ENST00000548421 EPHX2P34913 555 aa34.03■■■■□ 3.04
BRF1-213ENST00000548421 C16orf86Q6ZW13 317 aa34.03■■■■□ 3.04
BRF1-213ENST00000548421 APOBEC3FQ8IUX4 373 aaKnown RBP34.03■■■■□ 3.04
BRF1-213ENST00000548421 DYNLL2Q96FJ2 89 aa34.03■■■■□ 3.04
BRF1-213ENST00000548421 EHD4Q9H223 541 aa34.03■■■■□ 3.04
BRF1-213ENST00000548421 TOMM22Q9NS69 142 aa34.03■■■■□ 3.04
BRF1-213ENST00000548421 PI4KBQ9UBF8 816 aa34.03■■■■□ 3.04
BRF1-213ENST00000548421 DDX52Q9Y2R4 599 aaKnown RBP eCLIP34.03■■■■□ 3.04
BRF1-213ENST00000548421 ST18O60284 1047 aa34.02■■■■□ 3.04
BRF1-213ENST00000548421 CPA1P15085 419 aa34.02■■■■□ 3.04
BRF1-213ENST00000548421 ANGEL2Q5VTE6 544 aaKnown RBP34.02■■■■□ 3.04
BRF1-213ENST00000548421 USP50Q70EL3 339 aaPredicted RBP34.02■■■■□ 3.04
BRF1-213ENST00000548421 MB21D2Q8IYB1 491 aaPredicted RBP34.02■■■■□ 3.04
BRF1-213ENST00000548421 ZNF287Q9HBT7 754 aa34.02■■■■□ 3.04
BRF1-213ENST00000548421 SERPINB13Q9UIV8 391 aa34.02■■■■□ 3.04
BRF1-213ENST00000548421 COL9A3Q14050 684 aaPredicted RBP34.01■■■■□ 3.04
BRF1-213ENST00000548421 DHX32Q7L7V1 743 aaKnown RBP34.01■■■■□ 3.04
BRF1-213ENST00000548421 GGA3Q9NZ52 723 aa34.01■■■■□ 3.04
BRF1-213ENST00000548421 B4E1Z4 1266 aa34.01■■■■□ 3.03
BRF1-213ENST00000548421 ORC4O43929 436 aa34.01■■■■□ 3.03
BRF1-213ENST00000548421 RRP12Q5JTH9 1297 aaKnown RBP34.01■■■■□ 3.03
BRF1-213ENST00000548421 PITPNM2Q9BZ72 1349 aa34■■■■□ 3.03
BRF1-213ENST00000548421 NT5C2P49902 561 aa34■■■■□ 3.03
BRF1-213ENST00000548421 GABPAQ06546 454 aa34■■■■□ 3.03
BRF1-213ENST00000548421 RASA3Q14644 834 aa34■■■■□ 3.03
BRF1-213ENST00000548421 ESR2Q92731 530 aa34■■■■□ 3.03
BRF1-213ENST00000548421 CSRNP1Q96S65 589 aa34■■■■□ 3.03
BRF1-213ENST00000548421 TMEM39BQ9GZU3 492 aa34■■■■□ 3.03
BRF1-213ENST00000548421 TAOK2Q9UL54 1235 aa34■■■■□ 3.03
BRF1-213ENST00000548421 POLR2AP24928 1970 aaKnown RBP33.99■■■■□ 3.03
BRF1-213ENST00000548421 PRDM1O75626 825 aa33.99■■■■□ 3.03
BRF1-213ENST00000548421 MCM5P33992 734 aa33.99■■■■□ 3.03
BRF1-213ENST00000548421 TAF1DQ9H5J8 278 aaPredicted RBP33.99■■■■□ 3.03
BRF1-213ENST00000548421 PDRG1Q9NUG6 133 aa33.99■■■■□ 3.03
BRF1-213ENST00000548421 SWAP70Q9UH65 585 aa33.99■■■■□ 3.03
BRF1-213ENST00000548421 POTECB2RU33 542 aa33.98■■■■□ 3.03
BRF1-213ENST00000548421 CDK8P49336 464 aa33.98■■■■□ 3.03
BRF1-213ENST00000548421 SLC44A5Q8NCS7 719 aa33.98■■■■□ 3.03
BRF1-213ENST00000548421 TTC14Q96N46 770 aa33.98■■■■□ 3.03
BRF1-213ENST00000548421 MKNK2Q9HBH9 465 aa33.98■■■■□ 3.03
BRF1-213ENST00000548421 KDM4AO75164 1064 aa33.97■■■■□ 3.03
BRF1-213ENST00000548421 EXOSC10Q01780 885 aaKnown RBP33.97■■■■□ 3.03
BRF1-213ENST00000548421 FOXP4Q8IVH2 680 aaPredicted RBP33.97■■■■□ 3.03
BRF1-213ENST00000548421 CRACR2BQ8N4Y2 399 aaPredicted RBP33.97■■■■□ 3.03
BRF1-213ENST00000548421 WDR19Q8NEZ3 1342 aa33.97■■■■□ 3.03
BRF1-213ENST00000548421 DEFB129Q9H1M3 183 aa33.96■■■■□ 3.03
BRF1-213ENST00000548421 SCAF8Q9UPN6 1271 aaKnown RBP33.96■■■■□ 3.03
BRF1-213ENST00000548421 RANBP6O60518 1105 aaKnown RBP33.95■■■■□ 3.03
BRF1-213ENST00000548421 METTL16Q86W50 562 aaKnown RBP33.95■■■■□ 3.03
BRF1-213ENST00000548421 NKX2-3Q8TAU0 364 aa33.95■■■■□ 3.03
BRF1-213ENST00000548421 TCEANC2Q96MN5 208 aa33.95■■■■□ 3.03
BRF1-213ENST00000548421 TRIM34Q9BYJ4 488 aa33.95■■■■□ 3.03
BRF1-213ENST00000548421 PGAP2Q9UHJ9 254 aa33.95■■■■□ 3.03
BRF1-213ENST00000548421 PRC1O43663 620 aa33.95■■■■□ 3.02
BRF1-213ENST00000548421 CYB5R4Q7L1T6 521 aa33.95■■■■□ 3.02
BRF1-213ENST00000548421 PNMA8AQ86V59 439 aaPredicted RBP33.95■■■■□ 3.02
BRF1-213ENST00000548421 ZC3H15Q8WU90 426 aaKnown RBP33.95■■■■□ 3.02
BRF1-213ENST00000548421 SNX21Q969T3 373 aa33.95■■■■□ 3.02
BRF1-213ENST00000548421 ALDH8A1Q9H2A2 487 aaPredicted RBP33.95■■■■□ 3.02
BRF1-213ENST00000548421 ZSWIM5Q9P217 1185 aa33.95■■■■□ 3.02
BRF1-213ENST00000548421 ANTXR2P58335 489 aa33.94■■■■□ 3.02
BRF1-213ENST00000548421 CHST3Q7LGC8 479 aa33.94■■■■□ 3.02
BRF1-213ENST00000548421 HERC5Q9UII4 1024 aaKnown RBP33.94■■■■□ 3.02
BRF1-213ENST00000548421 PPP2R3BQ9Y5P8 575 aa33.94■■■■□ 3.02
BRF1-213ENST00000548421 CD2BP2O95400 341 aaKnown RBP33.93■■■■□ 3.02
BRF1-213ENST00000548421 RASA1P20936 1047 aa33.93■■■■□ 3.02
BRF1-213ENST00000548421 ZNF444Q8N0Y2 327 aaPredicted RBP33.93■■■■□ 3.02
BRF1-213ENST00000548421 DCPSQ96C86 337 aaKnown RBP33.93■■■■□ 3.02
BRF1-213ENST00000548421 TEPSINQ96N21 525 aa33.93■■■■□ 3.02
BRF1-213ENST00000548421 AK2P54819 239 aa33.92■■■■□ 3.02
BRF1-213ENST00000548421 CDAN1Q8IWY9 1227 aa33.92■■■■□ 3.02
BRF1-213ENST00000548421 DNAJC18Q9H819 358 aa33.92■■■■□ 3.02
BRF1-213ENST00000548421 SHMT1P34896 483 aa33.91■■■■□ 3.02
BRF1-213ENST00000548421 MCM2P49736 904 aa33.91■■■■□ 3.02
BRF1-213ENST00000548421 Q6ZUG5 572 aa33.91■■■■□ 3.02
BRF1-213ENST00000548421 LRRC2Q9BYS8 371 aa33.91■■■■□ 3.02
BRF1-213ENST00000548421 TSPY2A6NKD2 308 aa33.9■■■■□ 3.02
BRF1-213ENST00000548421 FGD1P98174 961 aa33.9■■■■□ 3.02
BRF1-213ENST00000548421 ANKRD1Q15327 319 aa33.9■■■■□ 3.02
BRF1-213ENST00000548421 EAPPQ56P03 285 aaPredicted RBP33.9■■■■□ 3.02
BRF1-213ENST00000548421 FBXL16Q8N461 479 aa33.9■■■■□ 3.02
BRF1-213ENST00000548421 TMEM87BQ96K49 555 aa33.9■■■■□ 3.02
BRF1-213ENST00000548421 MTA3Q9BTC8 594 aa33.9■■■■□ 3.02
BRF1-213ENST00000548421 VEGFAP15692 232 aaPredicted RBP33.89■■■■□ 3.02
BRF1-213ENST00000548421 FAM47AQ5JRC9 791 aa33.89■■■■□ 3.02
BRF1-213ENST00000548421 HSCBQ8IWL3 235 aa33.89■■■■□ 3.02
BRF1-213ENST00000548421 TBC1D12O60347 775 aa33.88■■■■□ 3.01
BRF1-213ENST00000548421 TFAP4Q01664 338 aa33.88■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms