RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 LRIT3Q3SXY7 679 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 MRPL50Q8N5N7 158 aaKnown RBP15.91■□□□□ 0.14
SCAF11-208ENST00000546534 MRS2Q9HD23 443 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 DDX4Q9NQI0 724 aaKnown RBP15.91■□□□□ 0.14
SCAF11-208ENST00000546534 GNL3LQ9NVN8 582 aaKnown RBP15.91■□□□□ 0.14
SCAF11-208ENST00000546534 MTMR10Q9NXD2 777 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 STXBP5LQ9Y2K9 1186 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 GAKO14976 1311 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 MYH13Q9UKX3 1938 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 DOCK2Q92608 1830 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 MAGEA10P43363 369 aaPredicted RBP15.9■□□□□ 0.14
SCAF11-208ENST00000546534 PHKA1P46020 1223 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 ATP2B3Q16720 1220 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 NBPF3Q9H094 633 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 GJD2Q9UKL4 321 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 DENND2AQ9ULE3 1009 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 RPTORQ8N122 1335 aa15.9■□□□□ 0.14
SCAF11-208ENST00000546534 PICALMQ13492 652 aa15.89■□□□□ 0.13
SCAF11-208ENST00000546534 TDHQ8IZJ6 230 aa15.89■□□□□ 0.13
SCAF11-208ENST00000546534 PROCA1Q8NCQ7 364 aaPredicted RBP15.89■□□□□ 0.13
SCAF11-208ENST00000546534 SIL1Q9H173 461 aa15.89■□□□□ 0.13
SCAF11-208ENST00000546534 C11orf49Q9H6J7 331 aa15.89■□□□□ 0.13
SCAF11-208ENST00000546534 HMX1Q9NP08 348 aaPredicted RBP15.89■□□□□ 0.13
SCAF11-208ENST00000546534 CEP126Q9P2H0 1117 aa15.89■□□□□ 0.13
SCAF11-208ENST00000546534 PNMA3Q9UL41 463 aa15.89■□□□□ 0.13
SCAF11-208ENST00000546534 PTPRFP10586 1907 aa15.88■□□□□ 0.13
SCAF11-208ENST00000546534 SEMA3EO15041 775 aa15.88■□□□□ 0.13
SCAF11-208ENST00000546534 EVX2Q03828 476 aa15.88■□□□□ 0.13
SCAF11-208ENST00000546534 SPP2Q13103 211 aa15.88■□□□□ 0.13
SCAF11-208ENST00000546534 PHIPQ8WWQ0 1821 aa15.88■□□□□ 0.13
SCAF11-208ENST00000546534 A0A0C4DFX4 3053 aa15.88■□□□□ 0.13
SCAF11-208ENST00000546534 DOCK3Q8IZD9 2030 aa15.87■□□□□ 0.13
SCAF11-208ENST00000546534 DOCK1Q14185 1865 aa15.87■□□□□ 0.13
SCAF11-208ENST00000546534 FAM196BA6NMK8 535 aa15.87■□□□□ 0.13
SCAF11-208ENST00000546534 GCLCP48506 637 aaPredicted RBP15.87■□□□□ 0.13
SCAF11-208ENST00000546534 DZIP1Q86YF9 867 aaKnown RBP15.87■□□□□ 0.13
SCAF11-208ENST00000546534 UBE2OQ9C0C9 1292 aaKnown RBP15.87■□□□□ 0.13
SCAF11-208ENST00000546534 OGDHLQ9ULD0 1010 aa15.87■□□□□ 0.13
SCAF11-208ENST00000546534 PTPRCP08575 1304 aa15.87■□□□□ 0.13
SCAF11-208ENST00000546534 TBC1D12O60347 775 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 CIAO1O76071 339 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 ADORA1P30542 326 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 BTDP43251 543 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 HMGCS2P54868 508 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 CCDC102BQ68D86 513 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 ZGPATQ8N5A5 531 aaKnown RBP15.86■□□□□ 0.13
SCAF11-208ENST00000546534 TRIB2Q92519 343 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 FAM163AQ96GL9 167 aaPredicted RBP15.86■□□□□ 0.13
SCAF11-208ENST00000546534 ASCC2Q9H1I8 757 aaPredicted RBP15.86■□□□□ 0.13
SCAF11-208ENST00000546534 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.86■□□□□ 0.13
SCAF11-208ENST00000546534 ABCF2Q9UG63 623 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 PFASO15067 1338 aa15.86■□□□□ 0.13
SCAF11-208ENST00000546534 RHBDL3P58872 404 aa15.85■□□□□ 0.13
SCAF11-208ENST00000546534 RASGRF1Q13972 1273 aa15.85■□□□□ 0.13
SCAF11-208ENST00000546534 SLF2Q8IX21 1173 aa15.85■□□□□ 0.13
SCAF11-208ENST00000546534 ZNF280CQ8ND82 737 aa15.85■□□□□ 0.13
SCAF11-208ENST00000546534 COL25A1Q9BXS0 654 aaPredicted RBP15.85■□□□□ 0.13
SCAF11-208ENST00000546534 MYH2Q9UKX2 1941 aa15.84■□□□□ 0.13
SCAF11-208ENST00000546534 PABPC4Q13310 644 aaKnown RBP eCLIP15.84■□□□□ 0.13
SCAF11-208ENST00000546534 OSBPL5Q9H0X9 879 aaPredicted RBP15.84■□□□□ 0.13
SCAF11-208ENST00000546534 MORF4L1Q9UBU8 362 aa15.84■□□□□ 0.13
SCAF11-208ENST00000546534 DDX60LQ5H9U9 1706 aaKnown RBP15.84■□□□□ 0.13
SCAF11-208ENST00000546534 MROH7-TTC4A0A0A0MT08 1334 aa15.84■□□□□ 0.13
SCAF11-208ENST00000546534 GPR75-ASB3A0A0A6YYF3 556 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 C19orf67A6NJJ6 358 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 CYP2B6P20813 491 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 IL15P40933 162 aaPredicted RBP15.83■□□□□ 0.12
SCAF11-208ENST00000546534 MECOMQ03112 1051 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 RRP1BQ14684 758 aaKnown RBP15.83■□□□□ 0.12
SCAF11-208ENST00000546534 SH3D19Q5HYK7 790 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 MAP3K21Q5TCX8 1036 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 ZNF384Q8TF68 577 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 SSH1Q8WYL5 1049 aa15.83■□□□□ 0.12
SCAF11-208ENST00000546534 PA2G4Q9UQ80 394 aaKnown RBP15.83■□□□□ 0.12
SCAF11-208ENST00000546534 PEX10O60683 326 aa15.82■□□□□ 0.12
SCAF11-208ENST00000546534 COL6A1P12109 1028 aa15.82■□□□□ 0.12
SCAF11-208ENST00000546534 CAP2P40123 477 aa15.82■□□□□ 0.12
SCAF11-208ENST00000546534 SPTY2D1Q68D10 685 aaPredicted RBP15.82■□□□□ 0.12
SCAF11-208ENST00000546534 PDS5AQ29RF7 1337 aaKnown RBP15.82■□□□□ 0.12
SCAF11-208ENST00000546534 LOC285556D6RIA3 1793 aa15.82■□□□□ 0.12
SCAF11-208ENST00000546534 USP17L5A8MUK1 530 aa15.81■□□□□ 0.12
SCAF11-208ENST00000546534 UBTFL1P0CB47 393 aaPredicted RBP15.81■□□□□ 0.12
SCAF11-208ENST00000546534 TIMM10P62072 90 aa15.81■□□□□ 0.12
SCAF11-208ENST00000546534 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.81■□□□□ 0.12
SCAF11-208ENST00000546534 NUDT12Q9BQG2 462 aa15.81■□□□□ 0.12
SCAF11-208ENST00000546534 TBC1D2Q9BYX2 928 aa15.81■□□□□ 0.12
SCAF11-208ENST00000546534 PLXNB2O15031 1838 aa15.8■□□□□ 0.12
SCAF11-208ENST00000546534 XRCC5P13010 732 aaKnown RBP15.8■□□□□ 0.12
SCAF11-208ENST00000546534 IRX3P78415 501 aaPredicted RBP15.8■□□□□ 0.12
SCAF11-208ENST00000546534 MDM2Q00987 491 aaPredicted RBP15.8■□□□□ 0.12
SCAF11-208ENST00000546534 CACNB2Q08289 660 aaPredicted RBP15.8■□□□□ 0.12
SCAF11-208ENST00000546534 LRRC26Q2I0M4 334 aa15.8■□□□□ 0.12
SCAF11-208ENST00000546534 ERICH6Q7L0X2 663 aa15.8■□□□□ 0.12
SCAF11-208ENST00000546534 P2RX7Q99572 595 aaKnown RBP15.8■□□□□ 0.12
SCAF11-208ENST00000546534 TXNRD2Q9NNW7 524 aa15.8■□□□□ 0.12
SCAF11-208ENST00000546534 ZNF521Q96K83 1311 aa15.79■□□□□ 0.12
SCAF11-208ENST00000546534 POTEB2H3BUK9 544 aa15.79■□□□□ 0.12
SCAF11-208ENST00000546534 LHX8Q68G74 356 aa15.79■□□□□ 0.12
SCAF11-208ENST00000546534 GUCD1Q96NT3 240 aa15.79■□□□□ 0.12
SCAF11-208ENST00000546534 AS3MTQ9HBK9 375 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms