RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 UBE4AQ14139 1066 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 SKOR2Q2VWA4 1001 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 ZMYM1Q5SVZ6 1142 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 KRT27Q7Z3Y8 459 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 ANKRD18AQ8IVF6 992 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 NLRP3Q96P20 1036 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 DNAJC2Q99543 621 aaKnown RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 PUS3Q9BZE2 481 aaKnown RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 GNL3LQ9NVN8 582 aaKnown RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 BSDC1Q9NW68 430 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 LIMCH1Q9UPQ0 1083 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 RBM8AQ9Y5S9 174 aaKnown RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 CARMIL3Q8ND23 1372 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 RPAP1Q9BWH6 1393 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-239ENST00000545694 MYH13Q9UKX3 1938 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 PDS5AQ29RF7 1337 aaKnown RBP7.37□□□□□ -1.23
SYNE1-239ENST00000545694 A0A0D9SFI3 127 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 FAM181BA6NEQ2 426 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 GOLIM4O00461 696 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 RFC4P35249 363 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 UBE3CQ15386 1083 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 CREB3L3Q68CJ9 461 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 PRPF40BQ6NWY9 871 aaKnown RBP7.37□□□□□ -1.23
SYNE1-239ENST00000545694 RUFY3Q7L099 469 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 FLAD1Q8NFF5 587 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 TMX3Q96JJ7 454 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 FAM227BQ96M60 508 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 TTC14Q96N46 770 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 ANKRD2Q9GZV1 360 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 PALD1Q9ULE6 856 aa7.37□□□□□ -1.23
SYNE1-239ENST00000545694 ZMYM6O95789 1325 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 SLC27A2O14975 620 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 PLSCR1O15162 318 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 HCLS1P14317 486 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-239ENST00000545694 CASTP20810 708 aaKnown RBP7.36□□□□□ -1.23
SYNE1-239ENST00000545694 PTH1RQ03431 593 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 NR5A1Q13285 461 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 MYSM1Q5VVJ2 828 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 BLOC1S2Q6QNY1 142 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 DDX46Q7L014 1031 aaKnown RBP7.36□□□□□ -1.23
SYNE1-239ENST00000545694 BPHLQ86WA6 291 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-239ENST00000545694 NBPF5PQ86XG9 351 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-239ENST00000545694 SYNE4Q8N205 404 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 FBXL16Q8N461 479 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 APPBP2Q92624 585 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 IL25Q9H293 177 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 PDRG1Q9NUG6 133 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 CCDC88AQ3V6T2 1871 aa7.36□□□□□ -1.23
SYNE1-239ENST00000545694 CHD4Q14839 1912 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 WDR19Q8NEZ3 1342 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 MYO5AQ9Y4I1 1855 aaKnown RBP7.35□□□□□ -1.23
SYNE1-239ENST00000545694 MAN1A2O60476 641 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 BMP2P12643 396 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 GNAT2P19087 354 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 MCM4P33991 863 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 NT5C2P49902 561 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 FKBP4Q02790 459 aaKnown RBP eCLIP7.35□□□□□ -1.23
SYNE1-239ENST00000545694 PDE4DQ08499 809 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 MAP3K12Q12852 859 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 CAVIN4Q5BKX8 364 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 TBC1D9BQ66K14 1250 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 CCDC102BQ68D86 513 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 TMC4Q7Z404 712 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 JAKMIP1Q96N16 626 aaKnown RBP7.35□□□□□ -1.23
SYNE1-239ENST00000545694 ATP6V1DQ9Y5K8 247 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 LAMA4Q16363 1823 aa7.35□□□□□ -1.23
SYNE1-239ENST00000545694 WDR33Q9C0J8 1336 aaKnown RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 LILRB3O75022 631 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 FRAT2O75474 233 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 CYP2E1P05181 493 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 HSPD1P10809 573 aaKnown RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 PDCP20941 246 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 RPS6KB1P23443 525 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 ADORA1P30542 326 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 ADD2P35612 726 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 MCAMP43121 646 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 RPS8P62241 208 aaKnown RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 CHRNDQ07001 517 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 ALX1Q15699 326 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 ERFEQ4G0M1 354 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 ZNF589Q86UQ0 364 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 SPATA5Q8NB90 893 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 RGS22Q8NE09 1264 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 TNPO1Q92973 898 aaKnown RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 CCDC85AQ96PX6 553 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 NEK1Q96PY6 1258 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 DENND2AQ9ULE3 1009 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 ISY1Q9ULR0 285 aaKnown RBP7.34□□□□□ -1.23
SYNE1-239ENST00000545694 KIF3AQ9Y496 699 aa7.34□□□□□ -1.23
SYNE1-239ENST00000545694 DUOX1Q9NRD9 1551 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 ZNF804BA4D1E1 1349 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 MAST3O60307 1309 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 MAGEB6P1A0A0J9YX57 407 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 ZAP70P43403 619 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 AK2P54819 239 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 ST5P78524 1137 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 IMMTQ16891 758 aaKnown RBP7.33□□□□□ -1.24
SYNE1-239ENST00000545694 DHX32Q7L7V1 743 aaKnown RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms