RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PPP1R12BO60237 982 aaPredicted RBP20.4■□□□□ 0.86
LIG1-204ENST00000542460 EIF5BO60841 1220 aaKnown RBP20.4■□□□□ 0.86
LIG1-204ENST00000542460 REC8O95072 547 aa20.4■□□□□ 0.86
LIG1-204ENST00000542460 MIGA2Q7L4E1 593 aa20.4■□□□□ 0.86
LIG1-204ENST00000542460 CRACR2BQ8N4Y2 399 aaPredicted RBP20.4■□□□□ 0.86
LIG1-204ENST00000542460 TRIM34Q9BYJ4 488 aa20.4■□□□□ 0.86
LIG1-204ENST00000542460 U3KPZ7 1027 aaPredicted RBP20.4■□□□□ 0.86
LIG1-204ENST00000542460 PPARAQ07869 468 aa20.39■□□□□ 0.85
LIG1-204ENST00000542460 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.39■□□□□ 0.85
LIG1-204ENST00000542460 SSC5DA1L4H1 1573 aa20.39■□□□□ 0.85
LIG1-204ENST00000542460 FKBP1BP68106 108 aa20.38■□□□□ 0.85
LIG1-204ENST00000542460 CST9Q5W186 159 aa20.38■□□□□ 0.85
LIG1-204ENST00000542460 ZNF341Q9BYN7 854 aa20.38■□□□□ 0.85
LIG1-204ENST00000542460 NAV1Q8NEY1 1877 aa20.38■□□□□ 0.85
LIG1-204ENST00000542460 ZNF213O14771 459 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 USP2O75604 605 aaPredicted RBP20.37■□□□□ 0.85
LIG1-204ENST00000542460 SLC3A2P08195 630 aaKnown RBP20.37■□□□□ 0.85
LIG1-204ENST00000542460 EVX2Q03828 476 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 GABPAQ06546 454 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 PRKG1Q13976 671 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 IMMTQ16891 758 aaKnown RBP20.37■□□□□ 0.85
LIG1-204ENST00000542460 C8orf34Q49A92 452 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 C2orf69Q8N8R5 385 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 GBA2Q9HCG7 927 aaPredicted RBP20.37■□□□□ 0.85
LIG1-204ENST00000542460 SWAP70Q9UH65 585 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 ANAPC4Q9UJX5 808 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 DDX60LQ5H9U9 1706 aaKnown RBP20.37■□□□□ 0.85
LIG1-204ENST00000542460 TTLL12Q14166 644 aaPredicted RBP20.37■□□□□ 0.85
LIG1-204ENST00000542460 ARMC9Q7Z3E5 817 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 KLRG1Q96E93 195 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 DYNLL2Q96FJ2 89 aa20.37■□□□□ 0.85
LIG1-204ENST00000542460 RBM8AQ9Y5S9 174 aaKnown RBP20.37■□□□□ 0.85
LIG1-204ENST00000542460 MYH1P12882 1939 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 ROBO3Q96MS0 1386 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 FAM196BA6NMK8 535 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 SMIM22K7EJ46 135 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 EPB41L2O43491 1005 aaKnown RBP20.36■□□□□ 0.85
LIG1-204ENST00000542460 SLURP2P0DP57 97 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 IREB2P48200 963 aaKnown RBP20.36■□□□□ 0.85
LIG1-204ENST00000542460 MAP3K11Q16584 847 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 C16orf86Q6ZW13 317 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 DNAJC18Q9H819 358 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 ANGEL1Q9UNK9 670 aaKnown RBP20.36■□□□□ 0.85
LIG1-204ENST00000542460 FZD1Q9UP38 647 aa20.36■□□□□ 0.85
LIG1-204ENST00000542460 HAND2P61296 217 aa20.35■□□□□ 0.85
LIG1-204ENST00000542460 TATDN1Q6P1N9 297 aa20.35■□□□□ 0.85
LIG1-204ENST00000542460 ZNF287Q9HBT7 754 aa20.35■□□□□ 0.85
LIG1-204ENST00000542460 ZNF112Q9UJU3 913 aa20.35■□□□□ 0.85
LIG1-204ENST00000542460 TMEM88BA6NKF7 163 aa20.34■□□□□ 0.85
LIG1-204ENST00000542460 CDK8P49336 464 aa20.34■□□□□ 0.85
LIG1-204ENST00000542460 CTDSPL2Q05D32 466 aa20.34■□□□□ 0.85
LIG1-204ENST00000542460 PDE4BQ07343 736 aa20.34■□□□□ 0.85
LIG1-204ENST00000542460 BAZ2AQ9UIF9 1905 aaKnown RBP20.34■□□□□ 0.85
LIG1-204ENST00000542460 PCNTO95613 3336 aa20.34■□□□□ 0.85
LIG1-204ENST00000542460 UNCXA6NJT0 531 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 PHF20L1A8MW92 1017 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 SHMT1P34896 483 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 MAP3K9P80192 1104 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 NECTIN1Q15223 517 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 MOB2Q70IA6 237 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 STK11IPQ8N1F8 1099 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.33■□□□□ 0.85
LIG1-204ENST00000542460 WRNIP1Q96S55 665 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 MKNK2Q9HBH9 465 aa20.33■□□□□ 0.85
LIG1-204ENST00000542460 CYP21A2P08686 494 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 SLC44A5Q8NCS7 719 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 USP26Q9BXU7 913 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 UBE2Q2LH0YL09 131 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 CTNND1O60716 968 aaKnown RBP20.32■□□□□ 0.84
LIG1-204ENST00000542460 FGRP09769 529 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 PCP11498 1178 aaKnown RBP20.32■□□□□ 0.84
LIG1-204ENST00000542460 CERKLQ49MI3 558 aaPredicted RBP20.32■□□□□ 0.84
LIG1-204ENST00000542460 AKNAD1Q5T1N1 836 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 LDLRAD1Q5T700 205 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 RNF20Q5VTR2 975 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 ANKRD13AQ8IZ07 590 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 NBPF3Q9H094 633 aa20.32■□□□□ 0.84
LIG1-204ENST00000542460 RNF41Q9H4P4 317 aaPredicted RBP20.32■□□□□ 0.84
LIG1-204ENST00000542460 SIPA1L1O43166 1804 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 SEC24BO95487 1268 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 INPP5BP32019 993 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 CAP2P40123 477 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 CREB3L3Q68CJ9 461 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 MFSD6Q6ZSS7 791 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 SAPCD2Q86UD0 394 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 STAG1Q8WVM7 1258 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 CCDC17Q96LX7 622 aa20.31■□□□□ 0.84
LIG1-204ENST00000542460 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.31■□□□□ 0.84
LIG1-204ENST00000542460 SLC27A2O14975 620 aa20.3■□□□□ 0.84
LIG1-204ENST00000542460 HUNKP57058 714 aa20.3■□□□□ 0.84
LIG1-204ENST00000542460 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.3■□□□□ 0.84
LIG1-204ENST00000542460 TBC1D10CQ8IV04 446 aa20.3■□□□□ 0.84
LIG1-204ENST00000542460 ZNF444Q8N0Y2 327 aaPredicted RBP20.3■□□□□ 0.84
LIG1-204ENST00000542460 ZKSCAN4Q969J2 545 aaPredicted RBP20.3■□□□□ 0.84
LIG1-204ENST00000542460 CSADQ9Y600 493 aa20.3■□□□□ 0.84
LIG1-204ENST00000542460 TLL2Q9Y6L7 1015 aa20.3■□□□□ 0.84
LIG1-204ENST00000542460 PAPPA2Q9BXP8 1791 aa20.3■□□□□ 0.84
LIG1-204ENST00000542460 ORC4O43929 436 aa20.29■□□□□ 0.84
LIG1-204ENST00000542460 PRDM1O75626 825 aa20.29■□□□□ 0.84
LIG1-204ENST00000542460 RASA1P20936 1047 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms