RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 ELOA3Q8NG57 546 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 NXPE3Q969Y0 559 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 PLD4Q96BZ4 506 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 TCF12Q99081 682 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 CEP44Q9C0F1 390 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 RASSF4Q9H2L5 321 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 GGT7Q9UJ14 662 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 PPIP5K1Q6PFW1 1433 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 ATP7BP35670 1465 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 RALGAPBQ86X10 1494 aa7.43□□□□□ -1.22
CPSF7-220ENST00000541963 QRICH2Q9H0J4 1663 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 A0A096LPE4 126 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 A0A1W2PPZ6 126 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 TRPA1O75762 1119 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 RLBP1P12271 317 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 ACPPP15309 386 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 PTPRAP18433 802 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 ZC3H6P61129 1189 aaKnown RBP7.42□□□□□ -1.22
CPSF7-220ENST00000541963 PTPN12Q05209 780 aaKnown RBP7.42□□□□□ -1.22
CPSF7-220ENST00000541963 LDLRAD1Q5T700 205 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 MEI1Q5TIA1 1274 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 UNC5CLQ8IV45 518 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 CACTIN-AS1Q8N1I8 211 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 GLIS3Q8NEA6 775 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 PUS7Q96PZ0 661 aaKnown RBP7.42□□□□□ -1.22
CPSF7-220ENST00000541963 BHLHE41Q9C0J9 482 aaPredicted RBP7.42□□□□□ -1.22
CPSF7-220ENST00000541963 CCSER2Q9H7U1 834 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 ABCB6Q9NP58 842 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 GGA1Q9UJY5 639 aa7.42□□□□□ -1.22
CPSF7-220ENST00000541963 POLR3AO14802 1390 aaPredicted RBP7.42□□□□□ -1.22
CPSF7-220ENST00000541963 RGS9O75916 674 aaPredicted RBP7.41□□□□□ -1.22
CPSF7-220ENST00000541963 VSIG8P0DPA2 414 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 CABP4P57796 275 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 ATP11AP98196 1134 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 SRSF11Q05519 484 aaKnown RBP7.41□□□□□ -1.22
CPSF7-220ENST00000541963 PWP1Q13610 501 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 CCDC85BQ15834 202 aaPredicted RBP7.41□□□□□ -1.22
CPSF7-220ENST00000541963 RELL1Q8IUW5 271 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 DDX54Q8TDD1 881 aaKnown RBP7.41□□□□□ -1.22
CPSF7-220ENST00000541963 BSNDQ8WZ55 320 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 CNTNAP3BQ96NU0 1288 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 NOC4LQ9BVI4 516 aaKnown RBP7.41□□□□□ -1.22
CPSF7-220ENST00000541963 CNTNAP3Q9BZ76 1288 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 SMG9Q9H0W8 520 aaKnown RBP7.41□□□□□ -1.22
CPSF7-220ENST00000541963 FRRS1LQ9P0K9 344 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 SBNO2Q9Y2G9 1366 aa7.41□□□□□ -1.22
CPSF7-220ENST00000541963 ST20-MTHFSA0A0A6YYL1 179 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 FAM83GA6ND36 823 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 GRIA4P48058 902 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 TMF1P82094 1093 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 GNL2Q13823 731 aaKnown RBP7.4□□□□□ -1.22
CPSF7-220ENST00000541963 SPRED3Q2MJR0 410 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 RPS26P11Q5JNZ5 115 aaPredicted RBP7.4□□□□□ -1.22
CPSF7-220ENST00000541963 PERM1Q5SV97 790 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 PSAPL1Q6NUJ1 521 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 SV2BQ7L1I2 683 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 HDGFL2Q7Z4V5 671 aaPredicted RBP7.4□□□□□ -1.22
CPSF7-220ENST00000541963 ZNF654Q8IZM8 581 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 TGIF2Q9GZN2 237 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 KLF15Q9UIH9 416 aa7.4□□□□□ -1.22
CPSF7-220ENST00000541963 MARF1Q9Y4F3 1742 aaKnown RBP7.39□□□□□ -1.23
CPSF7-220ENST00000541963 CDK12Q9NYV4 1490 aaPredicted RBP7.39□□□□□ -1.23
CPSF7-220ENST00000541963 NFKBIEO00221 500 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 ITPKAP23677 461 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 EVA1CP58658 441 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 PPP2R3AQ06190 1150 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 NFX1Q12986 1120 aaKnown RBP7.39□□□□□ -1.23
CPSF7-220ENST00000541963 NUTM2GQ5VZR2 741 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 DIEXFQ68CQ4 756 aaKnown RBP7.39□□□□□ -1.23
CPSF7-220ENST00000541963 SLCO4C1Q6ZQN7 724 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 USP48Q86UV5 1035 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 METTL16Q86W50 562 aaKnown RBP7.39□□□□□ -1.23
CPSF7-220ENST00000541963 FCHSD1Q86WN1 690 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 C3orf58Q8NDZ4 430 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 POP1Q99575 1024 aaKnown RBP7.39□□□□□ -1.23
CPSF7-220ENST00000541963 PRDM11Q9NQV5 511 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 TERF2IPQ9NYB0 399 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.39□□□□□ -1.23
CPSF7-220ENST00000541963 SAMM50Q9Y512 469 aa7.39□□□□□ -1.23
CPSF7-220ENST00000541963 TRPM3Q9HCF6 1732 aaPredicted RBP7.38□□□□□ -1.23
CPSF7-220ENST00000541963 TOPAZ1Q8N9V7 1692 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 TTC21AQ8NDW8 1320 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 METTL12A8MUP2 240 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 EIF4EBP3O60516 100 aaPredicted RBP7.38□□□□□ -1.23
CPSF7-220ENST00000541963 LMNB1P20700 586 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 CDC27P30260 824 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 VPS72Q15906 364 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 GDF6Q6KF10 455 aaPredicted RBP7.38□□□□□ -1.23
CPSF7-220ENST00000541963 TPTE2Q6XPS3 522 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 KCNH5Q8NCM2 988 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 ANKRD24Q8TF21 1146 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 TTC9Q92623 222 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 HHIPQ96QV1 700 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 LACRTQ9GZZ8 138 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 CLEC4MQ9H2X3 399 aaPredicted RBP7.38□□□□□ -1.23
CPSF7-220ENST00000541963 BTG4Q9NY30 223 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 GPN3Q9UHW5 284 aaPredicted RBP7.38□□□□□ -1.23
CPSF7-220ENST00000541963 ALS2Q96Q42 1657 aa7.38□□□□□ -1.23
CPSF7-220ENST00000541963 SLIT2O94813 1529 aa7.37□□□□□ -1.23
CPSF7-220ENST00000541963 BCL9LQ86UU0 1499 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms