RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 DZIP1Q86YF9 867 aaKnown RBP9.08□□□□□ -0.96
YBX3-209ENST00000540747 SMCR8Q8TEV9 937 aaPredicted RBP9.08□□□□□ -0.96
YBX3-209ENST00000540747 PAWRQ96IZ0 340 aaKnown RBP9.08□□□□□ -0.96
YBX3-209ENST00000540747 OSBPL5Q9H0X9 879 aaPredicted RBP9.08□□□□□ -0.96
YBX3-209ENST00000540747 MORF4L1Q9UBU8 362 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 STAP2Q9UGK3 403 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 SIPA1L1O43166 1804 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 A0A1B0GUL7 405 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 FAM196BA6NMK8 535 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 TFRCP02786 760 aaKnown RBP9.07□□□□□ -0.96
YBX3-209ENST00000540747 HMGCRP04035 888 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 GCLCP48506 637 aaPredicted RBP9.07□□□□□ -0.96
YBX3-209ENST00000540747 TIMM10P62072 90 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 TRIM32Q13049 653 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 PICALMQ13492 652 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 SPTY2D1Q68D10 685 aaPredicted RBP9.07□□□□□ -0.96
YBX3-209ENST00000540747 METTL16Q86W50 562 aaKnown RBP9.07□□□□□ -0.96
YBX3-209ENST00000540747 ZSCAN29Q8IWY8 852 aaPredicted RBP9.07□□□□□ -0.96
YBX3-209ENST00000540747 SLF2Q8IX21 1173 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 COA7Q96BR5 231 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 NSUN4Q96CB9 384 aaKnown RBP9.07□□□□□ -0.96
YBX3-209ENST00000540747 XAGE2Q96GT9 111 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 MEIS3Q99687 375 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 TBC1D2Q9BYX2 928 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 SMC4Q9NTJ3 1288 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 HMG20BQ9P0W2 317 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 PNMA3Q9UL41 463 aa9.07□□□□□ -0.96
YBX3-209ENST00000540747 CT47B1P0C2W7 299 aaPredicted RBP9.06□□□□□ -0.96
YBX3-209ENST00000540747 ARID4AP29374 1257 aaPredicted RBP9.06□□□□□ -0.96
YBX3-209ENST00000540747 CAP2P40123 477 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 HMGCS2P54868 508 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 JAG1P78504 1218 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 TFCP2Q12800 502 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 SPP2Q13103 211 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 POTEEQ6S8J3 1075 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 PI16Q6UXB8 463 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 NECAB2Q7Z6G3 386 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 ZNF280CQ8ND82 737 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 TRIB2Q92519 343 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 USP6NLQ92738 828 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 CDCA7LQ96GN5 454 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 WDR18Q9BV38 432 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 ASCC2Q9H1I8 757 aaPredicted RBP9.06□□□□□ -0.96
YBX3-209ENST00000540747 DNAJC18Q9H819 358 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 ABCF2Q9UG63 623 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 OGDHLQ9ULD0 1010 aa9.06□□□□□ -0.96
YBX3-209ENST00000540747 PFASO15067 1338 aa9.05□□□□□ -0.96
YBX3-209ENST00000540747 RPTORQ8N122 1335 aa9.05□□□□□ -0.96
YBX3-209ENST00000540747 COL6A1P12109 1028 aa9.05□□□□□ -0.96
YBX3-209ENST00000540747 HOXA7P31268 230 aaPredicted RBP9.05□□□□□ -0.96
YBX3-209ENST00000540747 MVPQ14764 893 aaKnown RBP9.05□□□□□ -0.96
YBX3-209ENST00000540747 LRIT3Q3SXY7 679 aa9.05□□□□□ -0.96
YBX3-209ENST00000540747 ERICH6Q7L0X2 663 aa9.05□□□□□ -0.96
YBX3-209ENST00000540747 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.05□□□□□ -0.96
YBX3-209ENST00000540747 NOB1Q9ULX3 412 aaKnown RBP9.05□□□□□ -0.96
YBX3-209ENST00000540747 ATAD5Q96QE3 1844 aa9.05□□□□□ -0.96
YBX3-209ENST00000540747 DDX60LQ5H9U9 1706 aaKnown RBP9.05□□□□□ -0.96
YBX3-209ENST00000540747 TTC28Q96AY4 2481 aa9.05□□□□□ -0.96
YBX3-209ENST00000540747 VCANP13611 3396 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 USP17L5A8MUK1 530 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 DLL1O00548 723 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 XRCC5P13010 732 aaKnown RBP9.04□□□□□ -0.96
YBX3-209ENST00000540747 MCAMP43121 646 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 PABPC4Q13310 644 aaKnown RBP eCLIP9.04□□□□□ -0.96
YBX3-209ENST00000540747 TBC1D9Q6ZT07 1266 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 C7orf61Q8IZ16 206 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 SPATA5Q8NB90 893 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 SLC17A8Q8NDX2 589 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 API5Q9BZZ5 524 aaKnown RBP9.04□□□□□ -0.96
YBX3-209ENST00000540747 NBPF3Q9H094 633 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 TXNRD2Q9NNW7 524 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 HMX1Q9NP08 348 aaPredicted RBP9.04□□□□□ -0.96
YBX3-209ENST00000540747 HERC5Q9UII4 1024 aaKnown RBP9.04□□□□□ -0.96
YBX3-209ENST00000540747 ZMYND8Q9ULU4 1186 aaPredicted RBP9.04□□□□□ -0.96
YBX3-209ENST00000540747 HDAC5Q9UQL6 1122 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 AKAP2Q9Y2D5 859 aa9.04□□□□□ -0.96
YBX3-209ENST00000540747 SPTBN5Q9NRC6 3674 aaKnown RBP9.04□□□□□ -0.96
YBX3-209ENST00000540747 ZNF316A6NFI3 1004 aaPredicted RBP9.03□□□□□ -0.96
YBX3-209ENST00000540747 SRGAP3O43295 1099 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 PEX10O60683 326 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 LDHCP07864 332 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 MAGEA10P43363 369 aaPredicted RBP9.03□□□□□ -0.96
YBX3-209ENST00000540747 BACE1P56817 501 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 PPP4CP60510 307 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 GSTO1P78417 241 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 SHROOM1Q2M3G4 852 aaPredicted RBP9.03□□□□□ -0.96
YBX3-209ENST00000540747 LHX8Q68G74 356 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 SH3RF3Q8TEJ3 882 aaPredicted RBP9.03□□□□□ -0.96
YBX3-209ENST00000540747 ARHGAP45Q92619 1136 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 P2RX7Q99572 595 aaKnown RBP9.03□□□□□ -0.96
YBX3-209ENST00000540747 C11orf49Q9H6J7 331 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 RBPJLQ9UBG7 517 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 TAOK2Q9UL54 1235 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 MAST2Q6P0Q8 1798 aa9.03□□□□□ -0.96
YBX3-209ENST00000540747 IGHA2P01877 340 aa9.02□□□□□ -0.97
YBX3-209ENST00000540747 PRKAR2AP13861 404 aaKnown RBP9.02□□□□□ -0.97
YBX3-209ENST00000540747 RARSP54136 660 aaKnown RBP9.02□□□□□ -0.97
YBX3-209ENST00000540747 HERVK_113P62684 666 aa9.02□□□□□ -0.97
YBX3-209ENST00000540747 MTMR2Q13614 643 aa9.02□□□□□ -0.97
YBX3-209ENST00000540747 MORN1Q5T089 497 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms