RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 USP17L21D6R901 530 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 KIF3CO14782 793 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 ORC4O43929 436 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 CYP2D6P10635 497 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 PCP11498 1178 aaKnown RBP12.57□□□□□ -0.4
VPS33A-204ENST00000540669 NT5C2P49902 561 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 RBM5P52756 815 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS33A-204ENST00000540669 PPARAQ07869 468 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 TNFAIP1Q13829 316 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 ANGEL2Q5VTE6 544 aaKnown RBP12.57□□□□□ -0.4
VPS33A-204ENST00000540669 KIAA1211Q6ZU35 1233 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 C16orf86Q6ZW13 317 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 NKX2-3Q8TAU0 364 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 NACAP1Q9BZK3 213 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 DHX36Q9H2U1 1008 aaKnown RBP12.57□□□□□ -0.4
VPS33A-204ENST00000540669 CTNNA3Q9UI47 895 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 SNX14Q9Y5W7 946 aa12.57□□□□□ -0.4
VPS33A-204ENST00000540669 CYP2D7A0A087X1C5 515 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 MYO1BO43795 1136 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 POTEIP0CG38 1075 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 POTEJP0CG39 1038 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 USP5P45974 858 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 TDO2P48775 406 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 PLCD1P51178 756 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 LDHDQ86WU2 507 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 TM6SF1Q9BZW5 370 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 TMOD2Q9NZR1 351 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 NEDD4P46934 1319 aa12.56□□□□□ -0.4
VPS33A-204ENST00000540669 TBC1D12O60347 775 aa12.55□□□□□ -0.4
VPS33A-204ENST00000540669 NOVP48745 357 aa12.55□□□□□ -0.4
VPS33A-204ENST00000540669 RASA3Q14644 834 aa12.55□□□□□ -0.4
VPS33A-204ENST00000540669 IMMTQ16891 758 aaKnown RBP12.55□□□□□ -0.4
VPS33A-204ENST00000540669 MB21D2Q8IYB1 491 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-204ENST00000540669 C22orf23Q9BZE7 217 aa12.55□□□□□ -0.4
VPS33A-204ENST00000540669 TMEM39BQ9GZU3 492 aa12.55□□□□□ -0.4
VPS33A-204ENST00000540669 MCM9Q9NXL9 1143 aa12.55□□□□□ -0.4
VPS33A-204ENST00000540669 PTPRFP10586 1907 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 TCP10L2B9ZVM9 353 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 E7EWF7 191 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 SHMT1P34896 483 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 PICALMQ13492 652 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 ADCK5Q3MIX3 580 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 AKNAD1Q5T1N1 836 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 CHADLQ6NUI6 762 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 TATDN1Q6P1N9 297 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 FBXL16Q8N461 479 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 AGXT2Q9BYV1 514 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 DEFB129Q9H1M3 183 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 HERC5Q9UII4 1024 aaKnown RBP12.54□□□□□ -0.4
VPS33A-204ENST00000540669 WDR19Q8NEZ3 1342 aa12.54□□□□□ -0.4
VPS33A-204ENST00000540669 RASA1P20936 1047 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 TNNI2P48788 182 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 HAND2P61296 217 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 TCP10Q12799 353 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 RBM26Q5T8P6 1007 aaKnown RBP12.53□□□□□ -0.4
VPS33A-204ENST00000540669 RNF20Q5VTR2 975 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 TTC6Q86TZ1 520 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 DDRGK1Q96HY6 314 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 VEZTQ9HBM0 779 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 PI4KBQ9UBF8 816 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 SAP30BPQ9UHR5 308 aaKnown RBP12.53□□□□□ -0.4
VPS33A-204ENST00000540669 SERPINB13Q9UIV8 391 aa12.53□□□□□ -0.4
VPS33A-204ENST00000540669 IGKV6D-41A0A0C4DH26 115 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 ZNF213O14771 459 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 APPP05067 770 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 APLP1P51693 650 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 ANTXR2P58335 489 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 CTDSPL2Q05D32 466 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 KRT32Q14532 448 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 FOXP4Q8IVH2 680 aaPredicted RBP12.52□□□□□ -0.41
VPS33A-204ENST00000540669 SLC44A5Q8NCS7 719 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 IL27Q8NEV9 243 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 DYNLL2Q96FJ2 89 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 TTC14Q96N46 770 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 CSRNP1Q96S65 589 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 MTA3Q9BTC8 594 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS33A-204ENST00000540669 ZSWIM6Q9HCJ5 1215 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 SWAP70Q9UH65 585 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 ZNF112Q9UJU3 913 aa12.52□□□□□ -0.41
VPS33A-204ENST00000540669 LOC285556D6RIA3 1793 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 MYH4Q9Y623 1939 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 PHF20L1A8MW92 1017 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 ADM5C9JUS6 153 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 HLA-DOAP06340 250 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 SLURP2P0DP57 97 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 HSPA6P17066 643 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 MCCP23508 829 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 CDK8P49336 464 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 EXOSC10Q01780 885 aaKnown RBP12.51□□□□□ -0.41
VPS33A-204ENST00000540669 RRP1BQ14684 758 aaKnown RBP12.51□□□□□ -0.41
VPS33A-204ENST00000540669 MAP3K11Q16584 847 aa12.51□□□□□ -0.41
VPS33A-204ENST00000540669 ALDH8A1Q9H2A2 487 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-204ENST00000540669 RNF41Q9H4P4 317 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-204ENST00000540669 UPF2Q9HAU5 1272 aaKnown RBP12.51□□□□□ -0.41
VPS33A-204ENST00000540669 ITGBL1O95965 494 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-204ENST00000540669 ZKSCAN1P17029 563 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-204ENST00000540669 NBPF12Q5TAG4 269 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-204ENST00000540669 KRT26Q7Z3Y9 468 aa12.5□□□□□ -0.41
VPS33A-204ENST00000540669 GLIS2Q9BZE0 524 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms