RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 RIOK3O14730 519 aaKnown RBP11.43□□□□□ -0.58
TRAF1-202ENST00000540010 ST5P78524 1137 aa11.43□□□□□ -0.58
TRAF1-202ENST00000540010 MAGEB6P1A0A0J9YX57 407 aa11.43□□□□□ -0.58
TRAF1-202ENST00000540010 U2AF2P26368 475 aaKnown RBP eCLIP11.43□□□□□ -0.58
TRAF1-202ENST00000540010 HIBADHP31937 336 aaKnown RBP11.43□□□□□ -0.58
TRAF1-202ENST00000540010 ST3GAL1Q11201 340 aa11.43□□□□□ -0.58
TRAF1-202ENST00000540010 MFSD6Q6ZSS7 791 aa11.43□□□□□ -0.58
TRAF1-202ENST00000540010 NUP88Q99567 741 aaPredicted RBP11.43□□□□□ -0.58
TRAF1-202ENST00000540010 SLC26A6Q9BXS9 759 aa11.43□□□□□ -0.58
TRAF1-202ENST00000540010 GPHNQ9NQX3 736 aaPredicted RBP11.43□□□□□ -0.58
TRAF1-202ENST00000540010 GNAT2P19087 354 aa11.43□□□□□ -0.58
TRAF1-202ENST00000540010 CCDC43Q96MW1 224 aaKnown RBP11.43□□□□□ -0.58
TRAF1-202ENST00000540010 STRBPQ96SI9 672 aaKnown RBP11.43□□□□□ -0.58
TRAF1-202ENST00000540010 A0A1B0GVL5 298 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 LMAN1P49257 510 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 METAP2P50579 478 aaKnown RBP eCLIP11.42□□□□□ -0.58
TRAF1-202ENST00000540010 CTDSPL2Q05D32 466 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 MCM6Q14566 821 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 TMEM67Q5HYA8 995 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 IFNL3Q8IZI9 196 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 LLPHQ9BRT6 129 aaKnown RBP11.42□□□□□ -0.58
TRAF1-202ENST00000540010 RTL9Q8NET4 1388 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 PDIA3P30101 505 aaKnown RBP11.42□□□□□ -0.58
TRAF1-202ENST00000540010 EXOSC10Q01780 885 aaKnown RBP11.42□□□□□ -0.58
TRAF1-202ENST00000540010 IFNKQ9P0W0 207 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 NSFL1CQ9UNZ2 370 aaKnown RBP11.42□□□□□ -0.58
TRAF1-202ENST00000540010 WNK3Q9BYP7 1800 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 IBSPP21815 317 aaPredicted RBP11.42□□□□□ -0.58
TRAF1-202ENST00000540010 NFIXQ14938 502 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 ZNF274Q96GC6 653 aaPredicted RBP11.42□□□□□ -0.58
TRAF1-202ENST00000540010 CALCOCO1Q9P1Z2 691 aa11.42□□□□□ -0.58
TRAF1-202ENST00000540010 PRKAB2O43741 272 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 SLU7O95391 586 aaKnown RBP11.41□□□□□ -0.58
TRAF1-202ENST00000540010 LIG1P18858 919 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 RXRAP19793 462 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 SYT10Q6XYQ8 523 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 DZIP1Q86YF9 867 aaKnown RBP11.41□□□□□ -0.58
TRAF1-202ENST00000540010 AFMP43652 599 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 SSRP1Q08945 709 aaKnown RBP11.41□□□□□ -0.58
TRAF1-202ENST00000540010 SLC10A5Q5PT55 438 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 LCORLQ8N3X6 602 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 CEP131Q9UPN4 1083 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 WTIPA6NIX2 430 aaPredicted RBP11.41□□□□□ -0.58
TRAF1-202ENST00000540010 RDXP35241 583 aaKnown RBP11.41□□□□□ -0.58
TRAF1-202ENST00000540010 ODF2Q5BJF6 829 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 ALG1Q9BT22 464 aa11.41□□□□□ -0.58
TRAF1-202ENST00000540010 ANGEL1Q9UNK9 670 aaKnown RBP11.41□□□□□ -0.58
TRAF1-202ENST00000540010 ZNF804BA4D1E1 1349 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 CCDC196A0A1B0GTZ2 297 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 KIAA0754O94854 1291 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 SLC4A8Q2Y0W8 1093 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 SOGA3Q5TF21 947 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 KRT23Q9C075 422 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 RNF41Q9H4P4 317 aaPredicted RBP11.4□□□□□ -0.58
TRAF1-202ENST00000540010 CNNM2Q9H8M5 875 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 TBC1D10CQ8IV04 446 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 NSUN7Q8NE18 718 aaKnown RBP11.4□□□□□ -0.58
TRAF1-202ENST00000540010 CCDC148Q8NFR7 591 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 SDR42E1Q8WUS8 393 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 MYH14Q7Z406 1995 aaKnown RBP11.4□□□□□ -0.58
TRAF1-202ENST00000540010 CARMIL3Q8ND23 1372 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 SPTLC2O15270 562 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 USP5P45974 858 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 CCDC150Q8NCX0 1101 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 FAM84BQ96KN1 310 aaPredicted RBP11.4□□□□□ -0.58
TRAF1-202ENST00000540010 PPP1R9BQ96SB3 815 aa11.4□□□□□ -0.58
TRAF1-202ENST00000540010 ANKRD36CQ5JPF3 1778 aa11.4□□□□□ -0.59
TRAF1-202ENST00000540010 GOLGA6L10A6NI86 522 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 OTUD7BQ6GQQ9 843 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 ZKSCAN3Q9BRR0 538 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 ZBTB43O43298 467 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 ADRA2BP18089 450 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 MB21D2Q8IYB1 491 aaPredicted RBP11.39□□□□□ -0.59
TRAF1-202ENST00000540010 KCNG4Q8TDN1 519 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 LRRC4BQ9NT99 713 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 N4BP3O15049 544 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 RGL2O15211 777 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 SERPINB2P05120 415 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 MATR3P43243 847 aaKnown RBP eCLIP11.39□□□□□ -0.59
TRAF1-202ENST00000540010 AKNAD1Q5T1N1 836 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 AMIGO3Q86WK7 504 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 MYRIPQ8NFW9 859 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 INCENPQ9NQS7 918 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.39□□□□□ -0.59
TRAF1-202ENST00000540010 TCRBV5S4A2TA0A5A2 114 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 CTCFLQ8NI51 663 aaPredicted RBP11.39□□□□□ -0.59
TRAF1-202ENST00000540010 GBP3Q9H0R5 595 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 CBX8Q9HC52 389 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 ARFGAP3Q9NP61 516 aa11.39□□□□□ -0.59
TRAF1-202ENST00000540010 TMEM87BQ96K49 555 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 MYH3P11055 1940 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 C6orf229H3BNL8 230 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 PHACTR2O75167 634 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 HMGB2P26583 209 aaKnown RBP11.38□□□□□ -0.59
TRAF1-202ENST00000540010 SPTY2D1Q68D10 685 aaPredicted RBP11.38□□□□□ -0.59
TRAF1-202ENST00000540010 IQCA1Q86XH1 822 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 FOXP2O15409 715 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 APBA3O96018 575 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 KLRK1P26718 216 aa11.38□□□□□ -0.59
TRAF1-202ENST00000540010 STX17P56962 302 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms