RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 BTDP43251 543 aa14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 SPTY2D1Q68D10 685 aaPredicted RBP14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 CCDC102BQ68D86 513 aa14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 ZNF280CQ8ND82 737 aa14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 TBC1D2Q9BYX2 928 aa14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 UBE2OQ9C0C9 1292 aaKnown RBP14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 OSBPL5Q9H0X9 879 aaPredicted RBP14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.46□□□□□ -0.093e-6■■■□□ 18.9
CLSTN3-209ENST00000539982 ABCF2Q9UG63 623 aa14.46□□□□□ -0.09
CLSTN3-209ENST00000539982 GPR75-ASB3A0A0A6YYF3 556 aa14.45□□□□□ -0.1
CLSTN3-209ENST00000539982 IL15P40933 162 aaPredicted RBP14.45□□□□□ -0.1
CLSTN3-209ENST00000539982 ASCC2Q9H1I8 757 aaPredicted RBP14.45□□□□□ -0.1
CLSTN3-209ENST00000539982 PDS5AQ29RF7 1337 aaKnown RBP14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 ADORA1P30542 326 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 HMGCS2P54868 508 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 RHBDL3P58872 404 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 RASGRF1Q13972 1273 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 SH3D19Q5HYK7 790 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 MAP3K21Q5TCX8 1036 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 TRIB2Q92519 343 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 MORF4L1Q9UBU8 362 aa14.44□□□□□ -0.1
CLSTN3-209ENST00000539982 MROH7-TTC4A0A0A0MT08 1334 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 FAM196BA6NMK8 535 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 USP17L5A8MUK1 530 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 MAP4K4O95819 1239 aaPredicted RBP14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 XRCC5P13010 732 aaKnown RBP14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 CYP2B6P20813 491 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 CAP2P40123 477 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 TIMM10P62072 90 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 ERICH6Q7L0X2 663 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 SSH1Q8WYL5 1049 aa14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 DDX60LQ5H9U9 1706 aaKnown RBP14.43□□□□□ -0.1
CLSTN3-209ENST00000539982 UBTFL1P0CB47 393 aaPredicted RBP14.42□□□□□ -0.1
CLSTN3-209ENST00000539982 COL6A1P12109 1028 aa14.42□□□□□ -0.1
CLSTN3-209ENST00000539982 PRKAR2AP13861 404 aaKnown RBP14.42□□□□□ -0.1
CLSTN3-209ENST00000539982 MECOMQ03112 1051 aa14.42□□□□□ -0.1
CLSTN3-209ENST00000539982 NUDT12Q9BQG2 462 aa14.42□□□□□ -0.1
CLSTN3-209ENST00000539982 AS3MTQ9HBK9 375 aa14.42□□□□□ -0.1
CLSTN3-209ENST00000539982 PFASO15067 1338 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 LDHCP07864 332 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 HOXA7P31268 230 aaPredicted RBP14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 RRP1BQ14684 758 aaKnown RBP14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 TRMT44Q8IYL2 757 aaKnown RBP14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 GPRC5AQ8NFJ5 357 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 ZNF384Q8TF68 577 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 P2RX7Q99572 595 aaKnown RBP14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 WDR18Q9BV38 432 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 COL25A1Q9BXS0 654 aaPredicted RBP14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 COPRSQ9NQ92 184 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 PA2G4Q9UQ80 394 aaKnown RBP14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 HDAC5Q9UQL6 1122 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 LOC285556D6RIA3 1793 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 PLXNB2O15031 1838 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 ZNF521Q96K83 1311 aa14.41□□□□□ -0.1
CLSTN3-209ENST00000539982 POTEB2H3BUK9 544 aa14.4□□□□□ -0.1
CLSTN3-209ENST00000539982 IRX3P78415 501 aaPredicted RBP14.4□□□□□ -0.1
CLSTN3-209ENST00000539982 GSTO1P78417 241 aa14.4□□□□□ -0.1
CLSTN3-209ENST00000539982 CACNB2Q08289 660 aaPredicted RBP14.4□□□□□ -0.1
CLSTN3-209ENST00000539982 FAM109BQ6ICB4 259 aaPredicted RBP14.4□□□□□ -0.1
CLSTN3-209ENST00000539982 SOCS4Q8WXH5 440 aa14.4□□□□□ -0.1
CLSTN3-209ENST00000539982 HERC5Q9UII4 1024 aaKnown RBP14.4□□□□□ -0.1
CLSTN3-209ENST00000539982 UNC80Q8N2C7 3258 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 COL2A1P02458 1487 aaPredicted RBP14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 ANP32CO43423 234 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 BACE1P56817 501 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 LHX8Q68G74 356 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 FAM9BQ8IZU0 186 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 XAGE2Q96GT9 111 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 TXNRD2Q9NNW7 524 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 TMOD4Q9NZQ9 345 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 RBPJLQ9UBG7 517 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 AKAP2Q9Y2D5 859 aa14.39□□□□□ -0.11
CLSTN3-209ENST00000539982 A0A1B0GUL7 405 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 C19orf81C9J6K1 198 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 ZKSCAN1P17029 563 aaPredicted RBP14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 MAPK4P31152 587 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 HERVK_113P62684 666 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 MDM2Q00987 491 aaPredicted RBP14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 MTMR2Q13614 643 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 PDE3AQ14432 1141 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 MVPQ14764 893 aaKnown RBP14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 LRRC26Q2I0M4 334 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 ALDH1L2Q3SY69 923 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 USP6NLQ92738 828 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 NSUN4Q96CB9 384 aaKnown RBP14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 PI4KBQ9UBF8 816 aa14.38□□□□□ -0.11
CLSTN3-209ENST00000539982 PEX10O60683 326 aa14.37□□□□□ -0.11
CLSTN3-209ENST00000539982 ASNSP08243 561 aa14.37□□□□□ -0.11
CLSTN3-209ENST00000539982 CCND3P30281 292 aaPredicted RBP14.37□□□□□ -0.11
CLSTN3-209ENST00000539982 RGS2P41220 211 aa14.37□□□□□ -0.11
CLSTN3-209ENST00000539982 Q3C1V9 767 aa14.37□□□□□ -0.11
CLSTN3-209ENST00000539982 DHX36Q9H2U1 1008 aaKnown RBP14.37□□□□□ -0.11
CLSTN3-209ENST00000539982 HMG20BQ9P0W2 317 aa14.37□□□□□ -0.11
CLSTN3-209ENST00000539982 ATAD5Q96QE3 1844 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 USP17L10C9JJH3 530 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 E9PSI1 815 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 TFCP2Q12800 502 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 MORN1Q5T089 497 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 TBC1D9Q6ZT07 1266 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms