RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TREML2Q5T2D2 321 aa15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 SH3BP5LQ7L8J4 393 aa15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 ITPRIPQ8IWB1 547 aa15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 AGTPBP1Q9UPW5 1226 aa15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 LOC285556D6RIA3 1793 aa15.47■□□□□ 0.07
CLSTN3-208ENST00000538933 FGFR2P21802 821 aa15.47■□□□□ 0.07
CLSTN3-208ENST00000538933 PANK1Q8TE04 598 aa15.47■□□□□ 0.07
CLSTN3-208ENST00000538933 TRIB2Q92519 343 aa15.47■□□□□ 0.07
CLSTN3-208ENST00000538933 SUCLG2Q96I99 432 aa15.47■□□□□ 0.07
CLSTN3-208ENST00000538933 PICK1Q9NRD5 415 aa15.47■□□□□ 0.07
CLSTN3-208ENST00000538933 CDX2Q99626 313 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-208ENST00000538933 USP40Q9NVE5 1235 aa15.46■□□□□ 0.07
CLSTN3-208ENST00000538933 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-208ENST00000538933 TNNQ9UQP3 1299 aa15.46■□□□□ 0.07
CLSTN3-208ENST00000538933 MYH2Q9UKX2 1941 aa15.46■□□□□ 0.07
CLSTN3-208ENST00000538933 TRIM75PA6NK02 468 aa15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 CTNND1O60716 968 aaKnown RBP15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 METTL24Q5JXM2 366 aa15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 LHX8Q68G74 356 aa15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 CCDC84Q86UT8 332 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 WDR66Q8TBY9 1149 aa15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 C9orf78Q9NZ63 289 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 COG6Q9Y2V7 657 aa15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 FRMPD3Q5JV73 1810 aa15.45■□□□□ 0.06
CLSTN3-208ENST00000538933 MAST2Q6P0Q8 1798 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 GCLCP48506 637 aaPredicted RBP15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 RABL6Q3YEC7 729 aaPredicted RBP15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 C20orf194Q5TEA3 1177 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 TMEM57Q8N5G2 664 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 MAFAQ8NHW3 353 aaPredicted RBP15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 IDI2Q9BXS1 227 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 SRCIN1Q9C0H9 1055 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 SEMA6BQ9H3T3 888 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 CHMP4BQ9H444 224 aaKnown RBP15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 LTBP2Q14767 1821 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 RFX7Q2KHR2 1363 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 NCOR1O75376 2440 aa15.44■□□□□ 0.06
CLSTN3-208ENST00000538933 UTYO14607 1347 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 CHD9Q3L8U1 2897 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 DDTLA6NHG4 134 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 ENTPD3O75355 529 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 ALDH1L1O75891 902 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 NBPF7P0C2Y1 421 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 PRKAR2AP13861 404 aaKnown RBP15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 COL9A1P20849 921 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 PRDX5P30044 214 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 RGS3P49796 1198 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 MVPQ14764 893 aaKnown RBP15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 ANKRD44Q8N8A2 993 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 PROCA1Q8NCQ7 364 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 CRBNQ96SW2 442 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 DDX19BQ9UMR2 479 aa15.43■□□□□ 0.06
CLSTN3-208ENST00000538933 RLBP1P12271 317 aa15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 XRCC5P13010 732 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 ZNF697Q5TEC3 545 aa15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 BICC1Q9H694 974 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 MORF4L1Q9UBU8 362 aa15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 PNMA3Q9UL41 463 aa15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 LRRFIP2Q9Y608 721 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 ATAD5Q96QE3 1844 aa15.42■□□□□ 0.06
CLSTN3-208ENST00000538933 REV3LO60673 3130 aa15.41■□□□□ 0.06
CLSTN3-208ENST00000538933 CYP2B6P20813 491 aa15.41■□□□□ 0.06
CLSTN3-208ENST00000538933 CACNB2Q08289 660 aaPredicted RBP15.41■□□□□ 0.06
CLSTN3-208ENST00000538933 PUM3Q15397 648 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-208ENST00000538933 KLHDC4Q8TBB5 520 aa15.41■□□□□ 0.06
CLSTN3-208ENST00000538933 USP6NLQ92738 828 aa15.41■□□□□ 0.06
CLSTN3-208ENST00000538933 ASCC2Q9H1I8 757 aaPredicted RBP15.41■□□□□ 0.06
CLSTN3-208ENST00000538933 IFIT1P09914 478 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-208ENST00000538933 SPP2Q13103 211 aa15.4■□□□□ 0.06
CLSTN3-208ENST00000538933 TTYH1Q9H313 450 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-208ENST00000538933 DDX4Q9NQI0 724 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-208ENST00000538933 RAPGEFL1Q9UHV5 662 aa15.4■□□□□ 0.06
CLSTN3-208ENST00000538933 LDHBP07195 334 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-208ENST00000538933 CCND3P30281 292 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-208ENST00000538933 MYLIPQ8WY64 445 aa15.39■□□□□ 0.05
CLSTN3-208ENST00000538933 SYMPKQ92797 1274 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-208ENST00000538933 GAKO14976 1311 aa15.39■□□□□ 0.05
CLSTN3-208ENST00000538933 SALL1Q9NSC2 1324 aa15.39■□□□□ 0.05
CLSTN3-208ENST00000538933 TBC1D12O60347 775 aa15.38■□□□□ 0.05
CLSTN3-208ENST00000538933 PEX10O60683 326 aa15.38■□□□□ 0.05
CLSTN3-208ENST00000538933 SHHQ15465 462 aa15.38■□□□□ 0.05
CLSTN3-208ENST00000538933 SH3D19Q5HYK7 790 aa15.38■□□□□ 0.05
CLSTN3-208ENST00000538933 EXOC6Q8TAG9 804 aa15.38■□□□□ 0.05
CLSTN3-208ENST00000538933 LBHD1Q9BQE6 289 aaPredicted RBP15.38■□□□□ 0.05
CLSTN3-208ENST00000538933 RLFQ13129 1914 aa15.38■□□□□ 0.05
CLSTN3-208ENST00000538933 HMGCS2P54868 508 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 RRP1BQ14684 758 aaKnown RBP15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 CCL14Q16627 93 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 C9orf50Q5SZB4 431 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 ZSCAN29Q8IWY8 852 aaPredicted RBP15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 ZNF280CQ8ND82 737 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 LPIN2Q92539 896 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 NUDT12Q9BQG2 462 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 TXNRD2Q9NNW7 524 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 HDAC5Q9UQL6 1122 aa15.37■□□□□ 0.05
CLSTN3-208ENST00000538933 GNAI3P08754 354 aa15.36■□□□□ 0.05
CLSTN3-208ENST00000538933 UBTFL1P0CB47 393 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-208ENST00000538933 POTEEQ6S8J3 1075 aa15.36■□□□□ 0.05
CLSTN3-208ENST00000538933 TRMT44Q8IYL2 757 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-208ENST00000538933 FAM163AQ96GL9 167 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms