RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 NSUN7Q8NE18 718 aaKnown RBP12.11□□□□□ -0.47
RTN3-208ENST00000537981 MRRFQ96E11 262 aaKnown RBP12.11□□□□□ -0.47
RTN3-208ENST00000537981 SPDL1Q96EA4 605 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 XRN1Q8IZH2 1706 aaKnown RBP12.11□□□□□ -0.47
RTN3-208ENST00000537981 FOXN1O15353 648 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 CCDC40Q4G0X9 1142 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 THEMIS2Q5TEJ8 643 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 AP1ARQ63HQ0 302 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 SSH3Q8TE77 659 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 EDC3Q96F86 508 aaKnown RBP12.1□□□□□ -0.47
RTN3-208ENST00000537981 COL15A1P39059 1388 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 POTEB2H3BUK9 544 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 ZEB2O60315 1214 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 SEC24CP53992 1094 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 MYL5Q02045 173 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 APBA1Q02410 837 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 KCTD16Q68DU8 428 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 ITFG2Q969R8 447 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 SELENOOQ9BVL4 669 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 PPLO60437 1756 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 LMTK2Q8IWU2 1503 aa12.1□□□□□ -0.47
RTN3-208ENST00000537981 EIF4E1BA6NMX2 242 aaKnown RBP12.09□□□□□ -0.47
RTN3-208ENST00000537981 TEX33O43247 280 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 CCDC175P0C221 793 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 PPFIA1Q13136 1202 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 PSMD2Q13200 908 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 SF3B2Q13435 895 aaKnown RBP12.09□□□□□ -0.47
RTN3-208ENST00000537981 ZNF827Q17R98 1081 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 TTMPQ5BVD1 217 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 WDR93Q6P2C0 686 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 FOXP4Q8IVH2 680 aaPredicted RBP12.09□□□□□ -0.47
RTN3-208ENST00000537981 CAPZA3Q96KX2 299 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 MMS19Q96T76 1030 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 TPX2Q9ULW0 747 aaKnown RBP12.09□□□□□ -0.47
RTN3-208ENST00000537981 IVNS1ABPQ9Y6Y0 642 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 PTPDC1A2A3K4 754 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 CTAGE9A4FU28 777 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 GOLGA6L9A6NEM1 432 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 IKBKBO14920 756 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 PFKFB1P16118 471 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 ERCC3P19447 782 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 MARCKSP29966 332 aaPredicted RBP12.09□□□□□ -0.47
RTN3-208ENST00000537981 FMR1Q06787 632 aaKnown RBP eCLIP12.09□□□□□ -0.47
RTN3-208ENST00000537981 NBPF9Q3BBW0 867 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 ADALQ6DHV7 355 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 SPDYE1Q8NFV5 336 aaPredicted RBP12.09□□□□□ -0.47
RTN3-208ENST00000537981 SH3GL2Q99962 352 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 VCPKMTQ9H867 229 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 HAUS2Q9NVX0 235 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 NDUFB9Q9Y6M9 179 aa12.09□□□□□ -0.47
RTN3-208ENST00000537981 A0A0G2JLW4 131 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 KIF5CO60282 957 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 GUCY1A3Q02108 690 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 IFT88Q13099 833 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 ANKRD18AQ8IVF6 992 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 ZNF513Q8N8E2 541 aaPredicted RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 ARMC2Q8NEN0 867 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 TACO1Q9BSH4 297 aaKnown RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 VIPAS39Q9H9C1 493 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 PA2G4Q9UQ80 394 aaKnown RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 SPATA31D1Q6ZQQ2 1576 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 PEX14O75381 377 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 KIAA0754O94854 1291 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 PYGLP06737 847 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 UBTFL1P0CB47 393 aaPredicted RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 HDLBPQ00341 1268 aaKnown RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 EZH2Q15910 746 aaKnown RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 CDCA2Q69YH5 1023 aaPredicted RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 NME9Q86XW9 330 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 LINC00301Q8NCQ3 95 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 LMBR1Q8WVP7 490 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 TBC1D31Q96DN5 1066 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 MED15Q96RN5 788 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 ZCWPW1Q9H0M4 648 aa12.08□□□□□ -0.48
RTN3-208ENST00000537981 G3BP2Q9UN86 482 aaKnown RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 CEP170BQ9Y4F5 1589 aaPredicted RBP12.08□□□□□ -0.48
RTN3-208ENST00000537981 PSMA5P28066 241 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 SMTNP53814 917 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 USP14P54578 494 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 AMPD2Q01433 879 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 MYSM1Q5VVJ2 828 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 NAA35Q5VZE5 725 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 SPECC1LQ69YQ0 1117 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 CCDC129Q6ZRS4 1044 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 THEMISQ8N1K5 641 aaPredicted RBP12.07□□□□□ -0.48
RTN3-208ENST00000537981 SMARCC2Q8TAQ2 1214 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 CRACR2AQ9BSW2 395 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 GBP3Q9H0R5 595 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 PICK1Q9NRD5 415 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 TLR7Q9NYK1 1049 aaKnown RBP12.07□□□□□ -0.48
RTN3-208ENST00000537981 ZFYVE9O95405 1425 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 GOLGA6BA6NDN3 693 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 STK25O00506 426 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 ZKSCAN8Q15776 578 aaPredicted RBP12.07□□□□□ -0.48
RTN3-208ENST00000537981 TBC1D25Q3MII6 688 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 SULT6B1Q6IMI4 303 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 CYB5D1Q6P9G0 228 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 CHST3Q7LGC8 479 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 KRI1Q8N9T8 703 aaKnown RBP12.07□□□□□ -0.48
RTN3-208ENST00000537981 HDAC7Q8WUI4 952 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms