RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 FOXN1O15353 648 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 TADA3O75528 432 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 CNNM3Q8NE01 707 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 PARP3Q9Y6F1 533 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 VWA3AA6NCI4 1184 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 GOLGA8AA7E2F4 631 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 ZRANB2O95218 330 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNE1-234ENST00000536990 MBD4O95243 580 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 TRIM29Q14134 588 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 STK11IPQ8N1F8 1099 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 SRRTQ9BXP5 876 aaKnown RBP13.25□□□□□ -0.29
SYNE1-234ENST00000536990 STK36Q9NRP7 1315 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 ARHGAP6O43182 974 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 PNMA6AP0CW24 399 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-234ENST00000536990 RASGRF1Q13972 1273 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 KRI1Q8N9T8 703 aaKnown RBP13.25□□□□□ -0.29
SYNE1-234ENST00000536990 MYL10Q9BUA6 226 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 INCENPQ9NQS7 918 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 PPP2R2CQ9Y2T4 447 aa13.25□□□□□ -0.29
SYNE1-234ENST00000536990 SNAP23O00161 211 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 IFIT3O14879 490 aaKnown RBP13.24□□□□□ -0.29
SYNE1-234ENST00000536990 CTDSPL2Q05D32 466 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 SUSD4Q5VX71 490 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 ARMT1Q9H993 441 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 EPB41L4AQ9HCS5 686 aaPredicted RBP13.24□□□□□ -0.29
SYNE1-234ENST00000536990 ZSWIM5Q9P217 1185 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 ZSCAN12O43309 604 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 ZNF18P17022 549 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 LIFRP42702 1097 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 TOB1P50616 345 aaPredicted RBP13.24□□□□□ -0.29
SYNE1-234ENST00000536990 FAM193AP78312 1265 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 TAF3Q5VWG9 929 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 UBXN4Q92575 508 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 MAN1B1Q9UKM7 699 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 SLC12A7Q9Y666 1083 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 TACC3Q9Y6A5 838 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 CHD4Q14839 1912 aa13.24□□□□□ -0.29
SYNE1-234ENST00000536990 URI1O94763 535 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-234ENST00000536990 FMNL1O95466 1100 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-234ENST00000536990 PLA2G4AP47712 749 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 NOSTRINQ8IVI9 506 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 CNNM2Q9H8M5 875 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 EIF5P55010 431 aaKnown RBP13.23□□□□□ -0.29
SYNE1-234ENST00000536990 FMR1Q06787 632 aaKnown RBP eCLIP13.23□□□□□ -0.29
SYNE1-234ENST00000536990 SPECC1Q5M775 1068 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 NT5DC1Q5TFE4 455 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 CARD6Q9BX69 1037 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 SLC26A6Q9BXS9 759 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 SEC31BQ9NQW1 1179 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 FBXO2Q9UK22 296 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-234ENST00000536990 A0A0G2JS52 829 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 EFCAB8A8MWE9 144 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 SARSP49591 514 aaKnown RBP13.23□□□□□ -0.29
SYNE1-234ENST00000536990 GRIN1Q05586 938 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 SSRP1Q08945 709 aaKnown RBP13.23□□□□□ -0.29
SYNE1-234ENST00000536990 AKNAD1Q5T1N1 836 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 MFSD6Q6ZSS7 791 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 TC2NQ8N9U0 490 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 MNS1Q8NEH6 495 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 KRT23Q9C075 422 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 NID2Q14112 1375 aa13.23□□□□□ -0.29
SYNE1-234ENST00000536990 ARAP2Q8WZ64 1704 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 GSG1L2A8MUP6 293 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 BTBD18B2RXH4 712 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 IFNAR1P17181 557 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 PTPREP23469 700 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 GUCY1A2P33402 732 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 BAG1Q99933 345 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-234ENST00000536990 LRP5O75197 1615 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 COL14A1Q05707 1796 aaKnown RBP13.22□□□□□ -0.29
SYNE1-234ENST00000536990 MMP1P03956 469 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 PRR29P0C7W0 189 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 POSTNQ15063 836 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 CREBRFQ8IUR6 639 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 MED15Q96RN5 788 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 WDR24Q96S15 920 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 NACAP1Q9BZK3 213 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 TOMM22Q9NS69 142 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 CCDC87Q9NVE4 849 aa13.22□□□□□ -0.29
SYNE1-234ENST00000536990 STX10O60499 249 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 GNAT2P19087 354 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 IGHMBP2P38935 993 aaKnown RBP13.21□□□□□ -0.29
SYNE1-234ENST00000536990 TDO2P48775 406 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 MORC3Q14149 939 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 CCDC152Q4G0S7 254 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 HSP90AA4PQ58FG1 418 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 RRP12Q5JTH9 1297 aaKnown RBP13.21□□□□□ -0.29
SYNE1-234ENST00000536990 MLKLQ8NB16 471 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 ENOX1Q8TC92 643 aaKnown RBP13.21□□□□□ -0.29
SYNE1-234ENST00000536990 ARGLU1Q9NWB6 273 aaPredicted RBP13.21□□□□□ -0.29
SYNE1-234ENST00000536990 NFE2L3Q9Y4A8 694 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 TIAM2Q8IVF5 1701 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 SLIT2O94813 1529 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 DOCK2Q92608 1830 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 PRKAB2O43741 272 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 BCAMP50895 628 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 MAP3K9P80192 1104 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 SPECC1LQ69YQ0 1117 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 INTS5Q6P9B9 1019 aaKnown RBP13.21□□□□□ -0.29
SYNE1-234ENST00000536990 TMCO3Q6UWJ1 677 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms