RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 FMNL1O95466 1100 aaPredicted RBP16.05■□□□□ 0.16
RTN3-207ENST00000536011 PSMC4P43686 418 aa16.05■□□□□ 0.16
RTN3-207ENST00000536011 HSP90AB4PQ58FF6 505 aa16.05■□□□□ 0.16
RTN3-207ENST00000536011 TMED8Q6PL24 325 aaPredicted RBP16.05■□□□□ 0.16
RTN3-207ENST00000536011 ARHGAP39Q9C0H5 1083 aa16.05■□□□□ 0.16
RTN3-207ENST00000536011 SNRKQ9NRH2 765 aa16.05■□□□□ 0.16
RTN3-207ENST00000536011 KIAA0100Q14667 2235 aaKnown RBP16.04■□□□□ 0.16
RTN3-207ENST00000536011 TRIM75PA6NK02 468 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 FCGRTP55899 365 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 SLC4A8Q2Y0W8 1093 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 GPAT2Q6NUI2 795 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 CEP85Q6P2H3 762 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 SH3RF3Q8TEJ3 882 aaPredicted RBP16.04■□□□□ 0.16
RTN3-207ENST00000536011 SMCR8Q8TEV9 937 aaPredicted RBP16.04■□□□□ 0.16
RTN3-207ENST00000536011 TRIM34Q9BYJ4 488 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 AATFQ9NY61 560 aaKnown RBP eCLIP16.04■□□□□ 0.16
RTN3-207ENST00000536011 PI4KBQ9UBF8 816 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 SRRDQ9UH36 339 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 DBNLQ9UJU6 430 aaKnown RBP16.04■□□□□ 0.16
RTN3-207ENST00000536011 PNMA3Q9UL41 463 aa16.04■□□□□ 0.16
RTN3-207ENST00000536011 CYP2E1P05181 493 aaPredicted RBP16.03■□□□□ 0.16
RTN3-207ENST00000536011 PPP4CP60510 307 aa16.03■□□□□ 0.16
RTN3-207ENST00000536011 PABPC4Q13310 644 aaKnown RBP eCLIP16.03■□□□□ 0.162e-7■■■■□ 20.1
RTN3-207ENST00000536011 PROCA1Q8NCQ7 364 aaPredicted RBP16.03■□□□□ 0.16
RTN3-207ENST00000536011 RAET1EQ8TD07 263 aa16.03■□□□□ 0.16
RTN3-207ENST00000536011 TRIM47Q96LD4 638 aa16.03■□□□□ 0.16
RTN3-207ENST00000536011 CHMP4BQ9H444 224 aaKnown RBP16.03■□□□□ 0.16
RTN3-207ENST00000536011 AGTPBP1Q9UPW5 1226 aa16.03■□□□□ 0.16
RTN3-207ENST00000536011 MYPNQ86TC9 1320 aa16.02■□□□□ 0.16
RTN3-207ENST00000536011 SLC34A2O95436 690 aa16.02■□□□□ 0.16
RTN3-207ENST00000536011 CYP2C8P10632 490 aa16.02■□□□□ 0.16
RTN3-207ENST00000536011 BCRP11274 1271 aa16.02■□□□□ 0.16
RTN3-207ENST00000536011 ZAP70P43403 619 aa16.02■□□□□ 0.16
RTN3-207ENST00000536011 ZNF280CQ8ND82 737 aa16.02■□□□□ 0.16
RTN3-207ENST00000536011 AS3MTQ9HBK9 375 aa16.02■□□□□ 0.16
RTN3-207ENST00000536011 PTPRFP10586 1907 aa16.02■□□□□ 0.15
RTN3-207ENST00000536011 ZSWIM8A7E2V4 1837 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 PHIPQ8WWQ0 1821 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 FAM196BA6NMK8 535 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 HMMRO75330 724 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 OSBPP22059 807 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 CAP2P40123 477 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 CRACR2BQ8N4Y2 399 aaPredicted RBP16.01■□□□□ 0.15
RTN3-207ENST00000536011 PANK1Q8TE04 598 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 SH3TC2Q8TF17 1288 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 EAF2Q96CJ1 260 aaPredicted RBP16.01■□□□□ 0.15
RTN3-207ENST00000536011 CCDC8Q9H0W5 538 aaPredicted RBP16.01■□□□□ 0.15
RTN3-207ENST00000536011 GINM1Q9NU53 330 aa16.01■□□□□ 0.15
RTN3-207ENST00000536011 FLT1P17948 1338 aa16■□□□□ 0.15
RTN3-207ENST00000536011 USP17L5A8MUK1 530 aa16■□□□□ 0.15
RTN3-207ENST00000536011 IDH1O75874 414 aaKnown RBP16■□□□□ 0.15
RTN3-207ENST00000536011 HLA-DOAP06340 250 aa16■□□□□ 0.15
RTN3-207ENST00000536011 ASNSP08243 561 aa16■□□□□ 0.15
RTN3-207ENST00000536011 EN2P19622 333 aaPredicted RBP16■□□□□ 0.15
RTN3-207ENST00000536011 GRK4P32298 578 aa16■□□□□ 0.15
RTN3-207ENST00000536011 MAP3K12Q12852 859 aa16■□□□□ 0.15
RTN3-207ENST00000536011 AACSQ86V21 672 aa16■□□□□ 0.15
RTN3-207ENST00000536011 FOXP4Q8IVH2 680 aaPredicted RBP16■□□□□ 0.15
RTN3-207ENST00000536011 MAPKAPK5Q8IW41 473 aa16■□□□□ 0.15
RTN3-207ENST00000536011 TGFBRAP1Q8WUH2 860 aa16■□□□□ 0.15
RTN3-207ENST00000536011 GCC1Q96CN9 775 aa16■□□□□ 0.15
RTN3-207ENST00000536011 TLR7Q9NYK1 1049 aaKnown RBP16■□□□□ 0.15
RTN3-207ENST00000536011 DDX19BQ9UMR2 479 aa16■□□□□ 0.15
RTN3-207ENST00000536011 EXOC6BQ9Y2D4 811 aa16■□□□□ 0.15
RTN3-207ENST00000536011 ATAD5Q96QE3 1844 aa15.99■□□□□ 0.15
RTN3-207ENST00000536011 ECM2O94769 699 aaPredicted RBP15.99■□□□□ 0.15
RTN3-207ENST00000536011 SLURP2P0DP57 97 aa15.99■□□□□ 0.15
RTN3-207ENST00000536011 CYP7A1P22680 504 aa15.99■□□□□ 0.15
RTN3-207ENST00000536011 SPP2Q13103 211 aa15.99■□□□□ 0.15
RTN3-207ENST00000536011 SLAIN1Q8ND83 568 aa15.99■□□□□ 0.15
RTN3-207ENST00000536011 NKX2-3Q8TAU0 364 aa15.99■□□□□ 0.15
RTN3-207ENST00000536011 PIH1D3Q9NQM4 214 aaKnown RBP15.99■□□□□ 0.15
RTN3-207ENST00000536011 FOCADQ5VW36 1801 aa15.98■□□□□ 0.15
RTN3-207ENST00000536011 LOC285556D6RIA3 1793 aa15.98■□□□□ 0.15
RTN3-207ENST00000536011 TNPO2O14787 897 aaKnown RBP15.98■□□□□ 0.15
RTN3-207ENST00000536011 CTGFP29279 349 aa15.98■□□□□ 0.15
RTN3-207ENST00000536011 GCLCP48506 637 aaPredicted RBP15.98■□□□□ 0.15
RTN3-207ENST00000536011 UBXN2AP68543 259 aa15.98■□□□□ 0.15
RTN3-207ENST00000536011 TTF1Q15361 905 aaPredicted RBP15.98■□□□□ 0.15
RTN3-207ENST00000536011 ADGRA1Q86SQ6 560 aa15.98■□□□□ 0.15
RTN3-207ENST00000536011 RPAP2Q8IXW5 612 aaPredicted RBP15.98■□□□□ 0.15
RTN3-207ENST00000536011 CLASRPQ8N2M8 674 aaKnown RBP15.98■□□□□ 0.15
RTN3-207ENST00000536011 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.98■□□□□ 0.15
RTN3-207ENST00000536011 BIN2Q9UBW5 565 aaPredicted RBP15.98■□□□□ 0.15
RTN3-207ENST00000536011 MYCP01106 439 aaPredicted RBP15.97■□□□□ 0.15
RTN3-207ENST00000536011 USP5P45974 858 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 HMGCS2P54868 508 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 PRKCZQ05513 592 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 FAM110CQ1W6H9 321 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 TREML2Q5T2D2 321 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 CCDC84Q86UT8 332 aaPredicted RBP15.97■□□□□ 0.15
RTN3-207ENST00000536011 METTL16Q86W50 562 aaKnown RBP15.97■□□□□ 0.15
RTN3-207ENST00000536011 MAGEB6Q8N7X4 407 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 KIF1BPQ96EK5 621 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 WDR18Q9BV38 432 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 TMOD4Q9NZQ9 345 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 MGAMO43451 1857 aa15.97■□□□□ 0.15
RTN3-207ENST00000536011 SH3D19Q5HYK7 790 aa15.96■□□□□ 0.15
RTN3-207ENST00000536011 RHPN1Q8TCX5 695 aa15.96■□□□□ 0.15
RTN3-207ENST00000536011 COA7Q96BR5 231 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms