RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 DZANK1Q9NVP4 752 aa8.17□□□□□ -1.1
USP28-202ENST00000535607 TTF2Q9UNY4 1162 aaKnown RBP8.17□□□□□ -1.1
USP28-202ENST00000535607 AKAP2Q9Y2D5 859 aa8.17□□□□□ -1.1
USP28-202ENST00000535607 NPHP4O75161 1426 aaPredicted RBP8.17□□□□□ -1.1
USP28-202ENST00000535607 FAM135BQ49AJ0 1406 aa8.17□□□□□ -1.1
USP28-202ENST00000535607 YTHDC2Q9H6S0 1430 aaKnown RBP8.17□□□□□ -1.1
USP28-202ENST00000535607 NKTRP30414 1462 aaKnown RBP8.17□□□□□ -1.1
USP28-202ENST00000535607 FSD2A1L4K1 749 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 ZBTB42B2RXF5 422 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 BCRP11274 1271 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 EPXP11678 715 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 ATP11AP98196 1134 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 PERM1Q5SV97 790 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 PEAR1Q5VY43 1037 aaPredicted RBP8.16□□□□□ -1.1
USP28-202ENST00000535607 TMEM102Q8N9M5 508 aaPredicted RBP8.16□□□□□ -1.1
USP28-202ENST00000535607 NUDT8Q8WV74 236 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 QRICH2Q9H0J4 1663 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 RRAGDQ9NQL2 400 aaPredicted RBP8.16□□□□□ -1.1
USP28-202ENST00000535607 POGKQ9P215 609 aa8.16□□□□□ -1.1
USP28-202ENST00000535607 ADGRB2O60241 1585 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 ABCC11Q96J66 1382 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 LILRB5O75023 590 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 LTKP29376 864 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 MCM4P33991 863 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 GMPRP36959 345 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 MRPL58Q14197 206 aaKnown RBP8.15□□□□□ -1.1
USP28-202ENST00000535607 GDF6Q6KF10 455 aaPredicted RBP8.15□□□□□ -1.1
USP28-202ENST00000535607 PRPF40BQ6NWY9 871 aaKnown RBP8.15□□□□□ -1.1
USP28-202ENST00000535607 FAM117BQ6P1L5 589 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 NEDD1Q8NHV4 660 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 DDX54Q8TDD1 881 aaKnown RBP8.15□□□□□ -1.1
USP28-202ENST00000535607 ACDQ96AP0 544 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 GBP4Q96PP9 640 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 KLF15Q9UIH9 416 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 KNSTRNQ9Y448 316 aa8.15□□□□□ -1.1
USP28-202ENST00000535607 TMEM238LA0A1B0GVL6 79 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 GOLGA6L22H0YM25 854 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 SCAMP3O14828 347 aaKnown RBP8.14□□□□□ -1.11
USP28-202ENST00000535607 TRPA1O75762 1119 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 ACPPP15309 386 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 NCLP19338 710 aaKnown RBP8.14□□□□□ -1.11
USP28-202ENST00000535607 SLFN5Q08AF3 891 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 DUSP27Q5VZP5 1158 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.14□□□□□ -1.11
USP28-202ENST00000535607 CCNJLQ8IV13 435 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 BSNDQ8WZ55 320 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 OSBPL7Q9BZF2 842 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 LACRTQ9GZZ8 138 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 RWDD1Q9H446 243 aaPredicted RBP8.14□□□□□ -1.11
USP28-202ENST00000535607 RRAGCQ9HB90 399 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 LRRC4BQ9NT99 713 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 KIAA1522Q9P206 1035 aaPredicted RBP8.14□□□□□ -1.11
USP28-202ENST00000535607 TBX22Q9Y458 520 aa8.14□□□□□ -1.11
USP28-202ENST00000535607 STRCQ7RTU9 1775 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 A0A096LPE4 126 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 A0A1W2PPZ6 126 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 OIP5O43482 229 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 XRCC6P12956 609 aaKnown RBP eCLIP8.13□□□□□ -1.11
USP28-202ENST00000535607 TAF1CQ15572 869 aaPredicted RBP8.13□□□□□ -1.11
USP28-202ENST00000535607 CHSY3Q70JA7 882 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 HSCBQ8IWL3 235 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 SVOPQ8N4V2 548 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 NXPE3Q969Y0 559 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 TBC1D32Q96NH3 1257 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 CEP44Q9C0F1 390 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 BHLHE41Q9C0J9 482 aaPredicted RBP8.13□□□□□ -1.11
USP28-202ENST00000535607 GRPEL1Q9HAV7 217 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 RNF19AQ9NV58 838 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 PPM1HQ9ULR3 514 aa8.13□□□□□ -1.11
USP28-202ENST00000535607 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.13□□□□□ -1.11
USP28-202ENST00000535607 CHD2O14647 1828 aaKnown RBP8.13□□□□□ -1.11
USP28-202ENST00000535607 METP08581 1390 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 NPC1L1Q9UHC9 1359 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 M0R082 166 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 SLURP2P0DP57 97 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 TCF3P15923 654 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 CDC27P30260 824 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 ARL4DP49703 201 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 KRT76Q01546 638 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 CALD1Q05682 793 aaKnown RBP8.12□□□□□ -1.11
USP28-202ENST00000535607 CCDC173Q0VFZ6 552 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 CC2D1BQ5T0F9 858 aaKnown RBP8.12□□□□□ -1.11
USP28-202ENST00000535607 ZNF417Q8TAU3 575 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 ZNF775Q96BV0 537 aaPredicted RBP8.12□□□□□ -1.11
USP28-202ENST00000535607 ZNF587Q96SQ5 575 aaPredicted RBP8.12□□□□□ -1.11
USP28-202ENST00000535607 LPIN3Q9BQK8 851 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 MUC3BQ9H195 1237 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 SLKQ9H2G2 1235 aaPredicted RBP8.12□□□□□ -1.11
USP28-202ENST00000535607 ANTXR1Q9H6X2 564 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 GPN3Q9UHW5 284 aaPredicted RBP8.12□□□□□ -1.11
USP28-202ENST00000535607 NAGPAQ9UK23 515 aa8.12□□□□□ -1.11
USP28-202ENST00000535607 ZNF521Q96K83 1311 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 PIK3R2O00459 728 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 EIF4EBP3O60516 100 aaPredicted RBP8.11□□□□□ -1.11
USP28-202ENST00000535607 RECKO95980 971 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 LMNB1P20700 586 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 MSNP26038 577 aaKnown RBP8.11□□□□□ -1.11
USP28-202ENST00000535607 ZNF76P36508 570 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 PTPN12Q05209 780 aaKnown RBP8.11□□□□□ -1.11
USP28-202ENST00000535607 PPP2R3AQ06190 1150 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms