RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 TRIM34Q9BYJ4 488 aa12.72□□□□□ -0.37
CAPN1-225ENST00000533704 SAP30BPQ9UHR5 308 aaKnown RBP12.72□□□□□ -0.37
CAPN1-225ENST00000533704 NAV1Q8NEY1 1877 aa12.72□□□□□ -0.37
CAPN1-225ENST00000533704 KIAA0100Q14667 2235 aaKnown RBP12.72□□□□□ -0.37
CAPN1-225ENST00000533704 COL2A1P02458 1487 aaPredicted RBP12.72□□□□□ -0.37
CAPN1-225ENST00000533704 PDE4DIPQ5VU43 2346 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 CXCL11O14625 94 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 TLR2O60603 784 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 RAB11FIP3O75154 756 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 PPP4CP60510 307 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 CAP1Q01518 475 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 MAP3K10Q02779 954 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 MAP3K12Q12852 859 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 ANKRD23Q86SG2 305 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 CRACR2BQ8N4Y2 399 aaPredicted RBP12.71□□□□□ -0.37
CAPN1-225ENST00000533704 ZCCHC17Q9NP64 241 aaKnown RBP12.71□□□□□ -0.37
CAPN1-225ENST00000533704 CPA4Q9UI42 421 aa12.71□□□□□ -0.37
CAPN1-225ENST00000533704 FLT1P17948 1338 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 GOLIM4O00461 696 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 TBC1D12O60347 775 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 USP5P45974 858 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 KIF22Q14807 665 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 ARHGEF6Q15052 776 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 ARHGAP39Q9C0H5 1083 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 PI4KBQ9UBF8 816 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 PALD1Q9ULE6 856 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 PTPN22Q9Y2R2 807 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 AFG3L2Q9Y4W6 797 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 MYH8P13535 1937 aa12.7□□□□□ -0.38
CAPN1-225ENST00000533704 SMARCA5O60264 1052 aaPredicted RBP12.69□□□□□ -0.38
CAPN1-225ENST00000533704 CYP2C8P10632 490 aa12.69□□□□□ -0.38
CAPN1-225ENST00000533704 RGS19P49795 217 aa12.69□□□□□ -0.38
CAPN1-225ENST00000533704 MOGSQ13724 837 aa12.69□□□□□ -0.38
CAPN1-225ENST00000533704 FASTKD5Q7L8L6 764 aaKnown RBP12.69□□□□□ -0.38
CAPN1-225ENST00000533704 PARK7Q99497 189 aaKnown RBP12.69□□□□□ -0.38
CAPN1-225ENST00000533704 DHX36Q9H2U1 1008 aaKnown RBP12.69□□□□□ -0.38
CAPN1-225ENST00000533704 HERC5Q9UII4 1024 aaKnown RBP12.69□□□□□ -0.38
CAPN1-225ENST00000533704 BAZ2AQ9UIF9 1905 aaKnown RBP12.68□□□□□ -0.38
CAPN1-225ENST00000533704 A0A0G2JLL6 359 aaPredicted RBP12.68□□□□□ -0.38
CAPN1-225ENST00000533704 HLA-DOAP06340 250 aa12.68□□□□□ -0.38
CAPN1-225ENST00000533704 CAP2P40123 477 aa12.68□□□□□ -0.38
CAPN1-225ENST00000533704 LACTBP83111 547 aaPredicted RBP12.68□□□□□ -0.38
CAPN1-225ENST00000533704 RRP1BQ14684 758 aaKnown RBP12.68□□□□□ -0.38
CAPN1-225ENST00000533704 TTF1Q15361 905 aaPredicted RBP12.68□□□□□ -0.38
CAPN1-225ENST00000533704 GPAT2Q6NUI2 795 aa12.68□□□□□ -0.38
CAPN1-225ENST00000533704 PRRT2Q7Z6L0 340 aaPredicted RBP12.68□□□□□ -0.38
CAPN1-225ENST00000533704 EDC3Q96F86 508 aaKnown RBP12.68□□□□□ -0.38
CAPN1-225ENST00000533704 LRRCC1Q9C099 1032 aa12.68□□□□□ -0.38
CAPN1-225ENST00000533704 BOLA2Q9H3K6 86 aa12.68□□□□□ -0.38
CAPN1-225ENST00000533704 LOC285556D6RIA3 1793 aa12.68□□□□□ -0.38
CAPN1-225ENST00000533704 DOCK3Q8IZD9 2030 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 MAGEB6P1A0A0J9YX57 407 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 IGSF3O75054 1194 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 GDF11O95390 407 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 PDE6AP16499 860 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 SPP2Q13103 211 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 SLC9C2Q5TAH2 1124 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 C17orf99Q6UX52 265 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 PTCH2Q9Y6C5 1203 aa12.67□□□□□ -0.38
CAPN1-225ENST00000533704 USP17L5A8MUK1 530 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 FMNL1O95466 1100 aaPredicted RBP12.66□□□□□ -0.38
CAPN1-225ENST00000533704 MYCP01106 439 aaPredicted RBP12.66□□□□□ -0.38
CAPN1-225ENST00000533704 PSMC4P43686 418 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 HMGCS2P54868 508 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 CERS3Q8IU89 383 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 FOXP4Q8IVH2 680 aaPredicted RBP12.66□□□□□ -0.38
CAPN1-225ENST00000533704 ZNF280CQ8ND82 737 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 SMCR8Q8TEV9 937 aaPredicted RBP12.66□□□□□ -0.38
CAPN1-225ENST00000533704 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.66□□□□□ -0.38
CAPN1-225ENST00000533704 DNAJC18Q9H819 358 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 AS3MTQ9HBK9 375 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 PAG1Q9NWQ8 432 aa12.66□□□□□ -0.38
CAPN1-225ENST00000533704 ADGRA2Q96PE1 1338 aa12.65□□□□□ -0.38
CAPN1-225ENST00000533704 ZNF532Q9HCE3 1301 aa12.65□□□□□ -0.38
CAPN1-225ENST00000533704 SHROOM1Q2M3G4 852 aaPredicted RBP12.65□□□□□ -0.38
CAPN1-225ENST00000533704 SLC9C1Q4G0N8 1177 aa12.65□□□□□ -0.38
CAPN1-225ENST00000533704 TREML2Q5T2D2 321 aa12.65□□□□□ -0.38
CAPN1-225ENST00000533704 AGTPBP1Q9UPW5 1226 aa12.65□□□□□ -0.38
CAPN1-225ENST00000533704 RBBP6Q7Z6E9 1792 aaKnown RBP12.65□□□□□ -0.38
CAPN1-225ENST00000533704 DDX60LQ5H9U9 1706 aaKnown RBP12.65□□□□□ -0.38
CAPN1-225ENST00000533704 POLR3DP05423 398 aaPredicted RBP12.64□□□□□ -0.39
CAPN1-225ENST00000533704 ASNSP08243 561 aa12.64□□□□□ -0.39
CAPN1-225ENST00000533704 ATP5JP18859 108 aa12.64□□□□□ -0.39
CAPN1-225ENST00000533704 CTGFP29279 349 aa12.64□□□□□ -0.39
CAPN1-225ENST00000533704 RRP1P56182 461 aaKnown RBP12.64□□□□□ -0.39
CAPN1-225ENST00000533704 JAG1P78504 1218 aa12.64□□□□□ -0.39
CAPN1-225ENST00000533704 SLFNL1Q499Z3 407 aa12.64□□□□□ -0.39
CAPN1-225ENST00000533704 TRIM47Q96LD4 638 aa12.64□□□□□ -0.39
CAPN1-225ENST00000533704 RIOK1Q9BRS2 568 aaKnown RBP12.64□□□□□ -0.39
CAPN1-225ENST00000533704 CRNKL1Q9BZJ0 848 aaKnown RBP12.64□□□□□ -0.39
CAPN1-225ENST00000533704 ZBTB21Q9ULJ3 1066 aa12.64□□□□□ -0.39
CAPN1-225ENST00000533704 BCRP11274 1271 aa12.63□□□□□ -0.39
CAPN1-225ENST00000533704 OSBPP22059 807 aa12.63□□□□□ -0.39
CAPN1-225ENST00000533704 FCGRTP55899 365 aa12.63□□□□□ -0.39
CAPN1-225ENST00000533704 MTMR2Q13614 643 aa12.63□□□□□ -0.39
CAPN1-225ENST00000533704 TMED8Q6PL24 325 aaPredicted RBP12.63□□□□□ -0.39
CAPN1-225ENST00000533704 NBPF11Q86T75 865 aa12.63□□□□□ -0.39
CAPN1-225ENST00000533704 TTC6Q86TZ1 520 aa12.63□□□□□ -0.39
CAPN1-225ENST00000533704 LCORLQ8N3X6 602 aa12.63□□□□□ -0.39
CAPN1-225ENST00000533704 PROCA1Q8NCQ7 364 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms