RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 FASTKD5Q7L8L6 764 aaKnown RBP16.19■□□□□ 0.18
VPS28-211ENST00000530790 PARK7Q99497 189 aaKnown RBP16.19■□□□□ 0.18
VPS28-211ENST00000530790 DNAJC2Q99543 621 aaKnown RBP16.19■□□□□ 0.18
VPS28-211ENST00000530790 TRIM34Q9BYJ4 488 aa16.19■□□□□ 0.18
VPS28-211ENST00000530790 PI4KBQ9UBF8 816 aa16.19■□□□□ 0.18
VPS28-211ENST00000530790 FOCADQ5VW36 1801 aa16.19■□□□□ 0.18
VPS28-211ENST00000530790 A0A0G2JLL6 359 aaPredicted RBP16.18■□□□□ 0.18
VPS28-211ENST00000530790 TRIM75PA6NK02 468 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 HLA-DOAP06340 250 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 RGS19P49795 217 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 MLLT1Q03111 559 aaPredicted RBP16.18■□□□□ 0.18
VPS28-211ENST00000530790 MOGSQ13724 837 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 KIF22Q14807 665 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 PRRT2Q7Z6L0 340 aaPredicted RBP16.18■□□□□ 0.18
VPS28-211ENST00000530790 CRACR2BQ8N4Y2 399 aaPredicted RBP16.18■□□□□ 0.18
VPS28-211ENST00000530790 LRRCC1Q9C099 1032 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.18■□□□□ 0.18
VPS28-211ENST00000530790 AFG3L2Q9Y4W6 797 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 HTTP42858 3142 aa16.18■□□□□ 0.18
VPS28-211ENST00000530790 GOLIM4O00461 696 aa16.17■□□□□ 0.18
VPS28-211ENST00000530790 USP5P45974 858 aa16.17■□□□□ 0.18
VPS28-211ENST00000530790 GADL1Q6ZQY3 521 aa16.17■□□□□ 0.18
VPS28-211ENST00000530790 CDK5RAP2Q96SN8 1893 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 PDE6AP16499 860 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 CAP2P40123 477 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 LACTBP83111 547 aaPredicted RBP16.16■□□□□ 0.18
VPS28-211ENST00000530790 SLC9C2Q5TAH2 1124 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 CCDC84Q86UT8 332 aaPredicted RBP16.16■□□□□ 0.18
VPS28-211ENST00000530790 YTHDC1Q96MU7 727 aaKnown RBP16.16■□□□□ 0.18
VPS28-211ENST00000530790 TBC1D2Q9BYX2 928 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 SAP30BPQ9UHR5 308 aaKnown RBP16.16■□□□□ 0.18
VPS28-211ENST00000530790 CPA4Q9UI42 421 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 PALD1Q9ULE6 856 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 PTPN22Q9Y2R2 807 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 SIPA1L1O43166 1804 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 ADGRA2Q96PE1 1338 aa16.16■□□□□ 0.18
VPS28-211ENST00000530790 RRP1P56182 461 aaKnown RBP16.15■□□□□ 0.18
VPS28-211ENST00000530790 CAP1Q01518 475 aa16.15■□□□□ 0.18
VPS28-211ENST00000530790 SLC4A8Q2Y0W8 1093 aa16.15■□□□□ 0.18
VPS28-211ENST00000530790 GPAT2Q6NUI2 795 aa16.15■□□□□ 0.18
VPS28-211ENST00000530790 PAG1Q9NWQ8 432 aa16.15■□□□□ 0.18
VPS28-211ENST00000530790 PHIPQ8WWQ0 1821 aa16.15■□□□□ 0.18
VPS28-211ENST00000530790 ATAD5Q96QE3 1844 aa16.15■□□□□ 0.18
VPS28-211ENST00000530790 MAGEB6P1A0A0J9YX57 407 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 CYP2C8P10632 490 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 ATP5JP18859 108 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 C17orf99Q6UX52 265 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 FOXP4Q8IVH2 680 aaPredicted RBP16.14■□□□□ 0.17
VPS28-211ENST00000530790 RIOK1Q9BRS2 568 aaKnown RBP16.14■□□□□ 0.17
VPS28-211ENST00000530790 ARHGAP39Q9C0H5 1083 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 DNAJC18Q9H819 358 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 AS3MTQ9HBK9 375 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 SLC45A1Q9Y2W3 748 aa16.14■□□□□ 0.17
VPS28-211ENST00000530790 USP17L5A8MUK1 530 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 GNRH1P01148 92 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 ASNSP08243 561 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 RRP1BQ14684 758 aaKnown RBP16.13■□□□□ 0.17
VPS28-211ENST00000530790 METTL16Q86W50 562 aaKnown RBP16.13■□□□□ 0.17
VPS28-211ENST00000530790 PROCA1Q8NCQ7 364 aaPredicted RBP16.13■□□□□ 0.17
VPS28-211ENST00000530790 ZNF280CQ8ND82 737 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 EDC3Q96F86 508 aaKnown RBP16.13■□□□□ 0.17
VPS28-211ENST00000530790 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.13■□□□□ 0.171e-6■■□□□ 12.6
VPS28-211ENST00000530790 BOLA2Q9H3K6 86 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 AGTPBP1Q9UPW5 1226 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 PTPRFP10586 1907 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 DDX60LQ5H9U9 1706 aaKnown RBP16.13■□□□□ 0.17
VPS28-211ENST00000530790 ZNF532Q9HCE3 1301 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 LOC285556D6RIA3 1793 aa16.13■□□□□ 0.17
VPS28-211ENST00000530790 SMARCA5O60264 1052 aaPredicted RBP16.12■□□□□ 0.17
VPS28-211ENST00000530790 SPP2Q13103 211 aa16.12■□□□□ 0.17
VPS28-211ENST00000530790 SMCR8Q8TEV9 937 aaPredicted RBP16.12■□□□□ 0.17
VPS28-211ENST00000530790 HAUS7Q99871 368 aa16.12■□□□□ 0.17
VPS28-211ENST00000530790 CRNKL1Q9BZJ0 848 aaKnown RBP16.12■□□□□ 0.17
VPS28-211ENST00000530790 PNMA3Q9UL41 463 aa16.12■□□□□ 0.17
VPS28-211ENST00000530790 PTCH2Q9Y6C5 1203 aa16.12■□□□□ 0.17
VPS28-211ENST00000530790 NAV1Q8NEY1 1877 aa16.12■□□□□ 0.17
VPS28-211ENST00000530790 ZSWIM8A7E2V4 1837 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 GDF11O95390 407 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 HMGCS2P54868 508 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 SLC9C1Q4G0N8 1177 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 TTC6Q86TZ1 520 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 GPATCH3Q96I76 525 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 EHD4Q9H223 541 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 DCTPP1Q9H773 170 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 GINM1Q9NU53 330 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 SERPINB13Q9UIV8 391 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 ZBTB21Q9ULJ3 1066 aa16.11■□□□□ 0.17
VPS28-211ENST00000530790 TCRBV5S4A2TA0A5A2 114 aa16.1■□□□□ 0.17
VPS28-211ENST00000530790 ECM2O94769 699 aaPredicted RBP16.1■□□□□ 0.17
VPS28-211ENST00000530790 BCRP11274 1271 aa16.1■□□□□ 0.17
VPS28-211ENST00000530790 PSMC4P43686 418 aa16.1■□□□□ 0.17
VPS28-211ENST00000530790 PRMT2P55345 433 aa16.1■□□□□ 0.17
VPS28-211ENST00000530790 PABPC4Q13310 644 aaKnown RBP eCLIP16.1■□□□□ 0.17
VPS28-211ENST00000530790 TREML2Q5T2D2 321 aa16.1■□□□□ 0.17
VPS28-211ENST00000530790 ARMC5Q96C12 935 aa16.1■□□□□ 0.17
VPS28-211ENST00000530790 ECHDC1Q9NTX5 307 aa16.1■□□□□ 0.17
VPS28-211ENST00000530790 MYH1P12882 1939 aa16.09■□□□□ 0.17
VPS28-211ENST00000530790 FMNL1O95466 1100 aaPredicted RBP16.09■□□□□ 0.17
VPS28-211ENST00000530790 POLR3DP05423 398 aaPredicted RBP16.09■□□□□ 0.17
VPS28-211ENST00000530790 ADD2P35612 726 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms