RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 AKAP11Q9UKA4 1901 aa19.71■□□□□ 0.75
LSM1-205ENST00000523511 MYH2Q9UKX2 1941 aa19.71■□□□□ 0.75
LSM1-205ENST00000523511 CCDC85CA6NKD9 419 aa19.71■□□□□ 0.75
LSM1-205ENST00000523511 DYNLL1P63167 89 aaKnown RBP19.71■□□□□ 0.75
LSM1-205ENST00000523511 LRRFIP1Q32MZ4 808 aaKnown RBP19.71■□□□□ 0.75
LSM1-205ENST00000523511 ANKRD23Q86SG2 305 aa19.71■□□□□ 0.75
LSM1-205ENST00000523511 CRNKL1Q9BZJ0 848 aaKnown RBP19.71■□□□□ 0.75
LSM1-205ENST00000523511 AS3MTQ9HBK9 375 aa19.71■□□□□ 0.75
LSM1-205ENST00000523511 GINM1Q9NU53 330 aa19.71■□□□□ 0.75
LSM1-205ENST00000523511 BTBD19C9JJ37 291 aa19.7■□□□□ 0.74
LSM1-205ENST00000523511 SMARCA5O60264 1052 aaPredicted RBP19.7■□□□□ 0.74
LSM1-205ENST00000523511 PDE6AP16499 860 aa19.7■□□□□ 0.74
LSM1-205ENST00000523511 KIF22Q14807 665 aa19.7■□□□□ 0.74
LSM1-205ENST00000523511 CRBNQ96SW2 442 aa19.7■□□□□ 0.74
LSM1-205ENST00000523511 PCDHB15Q9Y5E8 787 aa19.7■□□□□ 0.74
LSM1-205ENST00000523511 ERC2O15083 957 aa19.69■□□□□ 0.74
LSM1-205ENST00000523511 CAP2P40123 477 aa19.69■□□□□ 0.74
LSM1-205ENST00000523511 FAM43AQ8N2R8 423 aa19.69■□□□□ 0.74
LSM1-205ENST00000523511 DDRGK1Q96HY6 314 aa19.69■□□□□ 0.74
LSM1-205ENST00000523511 PALD1Q9ULE6 856 aa19.69■□□□□ 0.74
LSM1-205ENST00000523511 AFG3L2Q9Y4W6 797 aa19.69■□□□□ 0.74
LSM1-205ENST00000523511 ZNF532Q9HCE3 1301 aa19.69■□□□□ 0.74
LSM1-205ENST00000523511 TLR2O60603 784 aa19.68■□□□□ 0.74
LSM1-205ENST00000523511 ASNSP08243 561 aa19.68■□□□□ 0.74
LSM1-205ENST00000523511 GCC1Q96CN9 775 aa19.68■□□□□ 0.74
LSM1-205ENST00000523511 R3HDMLQ9H3Y0 253 aa19.68■□□□□ 0.74
LSM1-205ENST00000523511 USP17L5A8MUK1 530 aa19.67■□□□□ 0.74
LSM1-205ENST00000523511 PDHXO00330 501 aa19.67■□□□□ 0.74
LSM1-205ENST00000523511 POLR3DP05423 398 aaPredicted RBP19.67■□□□□ 0.74
LSM1-205ENST00000523511 FBXO46Q6PJ61 603 aaPredicted RBP19.67■□□□□ 0.74
LSM1-205ENST00000523511 METTL16Q86W50 562 aaKnown RBP19.67■□□□□ 0.74
LSM1-205ENST00000523511 AMOTL1Q8IY63 956 aa19.67■□□□□ 0.74
LSM1-205ENST00000523511 SAP30BPQ9UHR5 308 aaKnown RBP19.67■□□□□ 0.74
LSM1-205ENST00000523511 PABPC4Q13310 644 aaKnown RBP eCLIP19.66■□□□□ 0.74
LSM1-205ENST00000523511 UBE3CQ15386 1083 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 ZNF280CQ8ND82 737 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 PARK7Q99497 189 aaKnown RBP19.66■□□□□ 0.74
LSM1-205ENST00000523511 RIOK1Q9BRS2 568 aaKnown RBP19.66■□□□□ 0.74
LSM1-205ENST00000523511 RWDD1Q9H446 243 aaPredicted RBP19.66■□□□□ 0.74
LSM1-205ENST00000523511 EFCC1Q9HA90 598 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 SERPINB13Q9UIV8 391 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 TAOK2Q9UL54 1235 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 SLC45A1Q9Y2W3 748 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 TRIM17Q9Y577 477 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 TTC41PQ6P2S7 1318 aa19.66■□□□□ 0.74
LSM1-205ENST00000523511 A0A0G2JLL6 359 aaPredicted RBP19.65■□□□□ 0.74
LSM1-205ENST00000523511 TRIM75PA6NK02 468 aa19.65■□□□□ 0.74
LSM1-205ENST00000523511 FAM196BA6NMK8 535 aa19.65■□□□□ 0.74
LSM1-205ENST00000523511 ADD2P35612 726 aa19.65■□□□□ 0.74
LSM1-205ENST00000523511 HDAC1Q13547 482 aaPredicted RBP19.65■□□□□ 0.74
LSM1-205ENST00000523511 GADL1Q6ZQY3 521 aa19.65■□□□□ 0.74
LSM1-205ENST00000523511 PRRT2Q7Z6L0 340 aaPredicted RBP19.65■□□□□ 0.74
LSM1-205ENST00000523511 EHD4Q9H223 541 aa19.65■□□□□ 0.74
LSM1-205ENST00000523511 AK9Q5TCS8 1911 aa19.64■□□□□ 0.74
LSM1-205ENST00000523511 GNRH1P01148 92 aa19.64■□□□□ 0.73
LSM1-205ENST00000523511 ANKRD45Q5TZF3 282 aa19.64■□□□□ 0.73
LSM1-205ENST00000523511 CABP5Q9NP86 173 aa19.64■□□□□ 0.73
LSM1-205ENST00000523511 ATP8A2Q9NTI2 1148 aa19.64■□□□□ 0.73
LSM1-205ENST00000523511 MCM9Q9NXL9 1143 aa19.64■□□□□ 0.73
LSM1-205ENST00000523511 PNMA3Q9UL41 463 aa19.64■□□□□ 0.73
LSM1-205ENST00000523511 TCRBV5S4A2TA0A5A2 114 aa19.63■□□□□ 0.73
LSM1-205ENST00000523511 GLRX3O76003 335 aaKnown RBP19.63■□□□□ 0.73
LSM1-205ENST00000523511 ZFYP08048 801 aaPredicted RBP19.63■□□□□ 0.73
LSM1-205ENST00000523511 SPP2Q13103 211 aa19.63■□□□□ 0.73
LSM1-205ENST00000523511 PROCA1Q8NCQ7 364 aaPredicted RBP19.63■□□□□ 0.73
LSM1-205ENST00000523511 CD99L2Q8TCZ2 262 aa19.63■□□□□ 0.73
LSM1-205ENST00000523511 EDC3Q96F86 508 aaKnown RBP19.63■□□□□ 0.73
LSM1-205ENST00000523511 C19orf81C9J6K1 198 aa19.62■□□□□ 0.73
LSM1-205ENST00000523511 HOXD10P28358 340 aa19.62■□□□□ 0.73
LSM1-205ENST00000523511 OTOP1Q7RTM1 612 aa19.62■□□□□ 0.73
LSM1-205ENST00000523511 KBTBD3Q8NAB2 608 aa19.62■□□□□ 0.73
LSM1-205ENST00000523511 WDR18Q9BV38 432 aa19.62■□□□□ 0.73
LSM1-205ENST00000523511 TMOD4Q9NZQ9 345 aa19.62■□□□□ 0.73
LSM1-205ENST00000523511 HPS5Q9UPZ3 1129 aa19.62■□□□□ 0.73
LSM1-205ENST00000523511 SLURP2P0DP57 97 aa19.61■□□□□ 0.73
LSM1-205ENST00000523511 OSBPP22059 807 aa19.61■□□□□ 0.73
LSM1-205ENST00000523511 CERKLQ49MI3 558 aaPredicted RBP19.61■□□□□ 0.73
LSM1-205ENST00000523511 SMCR8Q8TEV9 937 aaPredicted RBP19.61■□□□□ 0.73
LSM1-205ENST00000523511 AGTPBP1Q9UPW5 1226 aa19.61■□□□□ 0.73
LSM1-205ENST00000523511 MAST2Q6P0Q8 1798 aa19.61■□□□□ 0.73
LSM1-205ENST00000523511 CASP8AP2Q9UKL3 1982 aa19.61■□□□□ 0.73
LSM1-205ENST00000523511 MBD4O95243 580 aa19.6■□□□□ 0.73
LSM1-205ENST00000523511 PRMT2P55345 433 aa19.6■□□□□ 0.73
LSM1-205ENST00000523511 GPAT2Q6NUI2 795 aa19.6■□□□□ 0.73
LSM1-205ENST00000523511 TATDN1Q6P1N9 297 aa19.6■□□□□ 0.73
LSM1-205ENST00000523511 C17orf99Q6UX52 265 aa19.6■□□□□ 0.73
LSM1-205ENST00000523511 LCORLQ8N3X6 602 aa19.6■□□□□ 0.73
LSM1-205ENST00000523511 ARMT1Q9H993 441 aa19.6■□□□□ 0.73
LSM1-205ENST00000523511 OTOFQ9HC10 1997 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 USP17L10C9JJH3 530 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 MX1P20591 662 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 BACE1P56817 501 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 LACTBP83111 547 aaPredicted RBP19.59■□□□□ 0.73
LSM1-205ENST00000523511 MOGSQ13724 837 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 SLC4A8Q2Y0W8 1093 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 NBPF11Q86T75 865 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 DCP1AQ9NPI6 582 aaPredicted RBP19.59■□□□□ 0.73
LSM1-205ENST00000523511 SWAP70Q9UH65 585 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 CPA4Q9UI42 421 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 PTPN22Q9Y2R2 807 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms