RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 KRT79Q5XKE5 535 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.22□□□□□ -0.29
SYNPO-204ENST00000519664 RRP36Q96EU6 259 aaKnown RBP13.22□□□□□ -0.29
SYNPO-204ENST00000519664 DESI2Q9BSY9 194 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 PDE8BO95263 885 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 TFAP4Q01664 338 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 GOLGA8FQ08AF8 430 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 GOLGA8DPQ0D2H9 430 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 TBC1D8BQ0IIM8 1120 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 PARP10Q53GL7 1025 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 FAM182BQ5T319 152 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 FANCLQ9NW38 375 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 TAB2Q9NYJ8 693 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 PNPLA6Q8IY17 1366 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 PRKAB2O43741 272 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 RNF17Q9BXT8 1623 aaKnown RBP13.22□□□□□ -0.29
SYNPO-204ENST00000519664 NLRP1Q9C000 1473 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 UFL1O94874 794 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 KIF5AQ12840 1032 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 DNAJC21Q5F1R6 531 aaKnown RBP13.22□□□□□ -0.29
SYNPO-204ENST00000519664 C11orf57Q6ZUT1 292 aaPredicted RBP13.22□□□□□ -0.29
SYNPO-204ENST00000519664 CTNNBL1Q8WYA6 563 aaPredicted RBP13.22□□□□□ -0.29
SYNPO-204ENST00000519664 DPCR1Q3MIW9 517 aa13.21□□□□□ -0.29
SYNPO-204ENST00000519664 PSMB7Q99436 277 aa13.21□□□□□ -0.29
SYNPO-204ENST00000519664 NYXQ9GZU5 481 aa13.21□□□□□ -0.29
SYNPO-204ENST00000519664 CCNL1Q9UK58 526 aaPredicted RBP13.21□□□□□ -0.29
SYNPO-204ENST00000519664 PCCAP05165 728 aaPredicted RBP13.21□□□□□ -0.3
SYNPO-204ENST00000519664 PPARAQ07869 468 aa13.21□□□□□ -0.3
SYNPO-204ENST00000519664 IFFO1Q0D2I5 559 aa13.21□□□□□ -0.3
SYNPO-204ENST00000519664 PLS1Q14651 629 aa13.21□□□□□ -0.3
SYNPO-204ENST00000519664 CCDC122Q5T0U0 273 aa13.21□□□□□ -0.3
SYNPO-204ENST00000519664 WWC2Q6AWC2 1192 aa13.21□□□□□ -0.3
SYNPO-204ENST00000519664 MADDQ8WXG6 1647 aa13.21□□□□□ -0.3
SYNPO-204ENST00000519664 KRT9P35527 623 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 RNASE9P60153 205 aaKnown RBP13.2□□□□□ -0.3
SYNPO-204ENST00000519664 FANCBQ8NB91 859 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 TGFBRAP1Q8WUH2 860 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 CACTINQ8WUQ7 758 aaKnown RBP13.2□□□□□ -0.3
SYNPO-204ENST00000519664 INCENPQ9NQS7 918 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 ZNF215Q9UL58 517 aaPredicted RBP13.2□□□□□ -0.3
SYNPO-204ENST00000519664 TBCAO75347 108 aaKnown RBP13.2□□□□□ -0.3
SYNPO-204ENST00000519664 PDE4DQ08499 809 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 DYMQ7RTS9 669 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 NOSTRINQ8IVI9 506 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 IL25Q9H293 177 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 PCDHA5Q9Y5H7 936 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 TNKSO95271 1327 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 GNA11P29992 359 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 RPS8P62241 208 aaKnown RBP13.2□□□□□ -0.3
SYNPO-204ENST00000519664 PPP2R3AQ06190 1150 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 MAATS1Q7Z4T9 603 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 CNBD1Q8NA66 436 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 GOLGA1Q92805 767 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 ERCC6LQ2NKX8 1250 aa13.2□□□□□ -0.3
SYNPO-204ENST00000519664 GIGYF2Q6Y7W6 1299 aaKnown RBP13.2□□□□□ -0.3
SYNPO-204ENST00000519664 A2ML1A8K2U0 1454 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 KRT86O43790 486 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 CCNT1O60563 726 aaKnown RBP13.19□□□□□ -0.3
SYNPO-204ENST00000519664 PARP1P09874 1014 aaKnown RBP13.19□□□□□ -0.3
SYNPO-204ENST00000519664 GOLGA8HP0CJ92 632 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 TNIP1Q15025 636 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 LRRC7Q96NW7 1537 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 TRAPPC3LQ5T215 181 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 APOA5Q6Q788 366 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 MLKLQ8NB16 471 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 HECW2Q9P2P5 1572 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 TRAF5O00463 557 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 CSGALNACT2Q8N6G5 542 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 ERO1AQ96HE7 468 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 ANKRD2Q9GZV1 360 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.19□□□□□ -0.3
SYNPO-204ENST00000519664 GLI2P10070 1586 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 MROH5Q6ZUA9 1318 aa13.19□□□□□ -0.3
SYNPO-204ENST00000519664 ANKRD62A6NC57 917 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 FCHSD1Q86WN1 690 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 LRRC8AQ8IWT6 810 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 SLF1Q9BQI6 1058 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 RBM28Q9NW13 759 aaKnown RBP13.18□□□□□ -0.3
SYNPO-204ENST00000519664 PKD2L1Q9P0L9 805 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 TBC1D7Q9P0N9 293 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 SYNRGQ9UMZ2 1314 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 UNC13BO14795 1591 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 TOM1O60784 492 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 CDC25AP30304 524 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 NR5A1Q13285 461 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 ARID5BQ14865 1188 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 CNGA4Q8IV77 575 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 GRAMD1CQ8IYS0 662 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 GDAP1L1Q96MZ0 367 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 E9PCH4 1651 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 CHRNDQ07001 517 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 SMARCC2Q8TAQ2 1214 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 GPKOWQ92917 476 aaPredicted RBP eCLIP13.18□□□□□ -0.3
SYNPO-204ENST00000519664 VEZTQ9HBM0 779 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 CYP2D7A0A087X1C5 515 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 GSTTP1A0A1W2PQM5 241 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 TCP10Q12799 353 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 HINFPQ9BQA5 517 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 NOC4LQ9BVI4 516 aaKnown RBP13.18□□□□□ -0.3
SYNPO-204ENST00000519664 SRRTQ9BXP5 876 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms