RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	PICALM	Q13492	652 aa		13.14	□□□□□ -0.31
CLDND1-231	ENST00000515620	MAP3K21	Q5TCX8	1036 aa		13.14	□□□□□ -0.31
CLDND1-231	ENST00000515620	MAFA	Q8NHW3	353 aa	Predicted RBP	13.14	□□□□□ -0.31
CLDND1-231	ENST00000515620	LPIN2	Q92539	896 aa		13.14	□□□□□ -0.31
CLDND1-231	ENST00000515620	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.14	□□□□□ -0.31
CLDND1-231	ENST00000515620	PLXNB2	O15031	1838 aa		13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	HMGCS2	P54868	508 aa		13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	SPP2	Q13103	211 aa		13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	DDX4	Q9NQI0	724 aa	Known RBP	13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	GAK	O14976	1311 aa		13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	SALL1	Q9NSC2	1324 aa		13.13	□□□□□ -0.31
CLDND1-231	ENST00000515620	FAM196B	A6NMK8	535 aa		13.12	□□□□□ -0.31
CLDND1-231	ENST00000515620	ZKSCAN1	P17029	563 aa	Predicted RBP	13.12	□□□□□ -0.31
CLDND1-231	ENST00000515620	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.12	□□□□□ -0.31
CLDND1-231	ENST00000515620	CDX2	Q99626	313 aa	Predicted RBP	13.12	□□□□□ -0.31
CLDND1-231	ENST00000515620	EYS	Q5T1H1	3165 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	TTC28	Q96AY4	2481 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	EYA2	O00167	538 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	PEX10	O60683	326 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	CCND3	P30281	292 aa	Predicted RBP	13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	CACNB2	Q08289	660 aa	Predicted RBP	13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	DZIP1	Q86YF9	867 aa	Known RBP	13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	ZNF280C	Q8ND82	737 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	SOCS4	Q8WXH5	440 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	NUDT12	Q9BQG2	462 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.11	□□□□□ -0.31	1e-6	■■■□□ 18.4
CLDND1-231	ENST00000515620	GNL3L	Q9NVN8	582 aa	Known RBP	13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	MORF4L1	Q9UBU8	362 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	SALL2	Q9Y467	1007 aa	Predicted RBP	13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	MAST2	Q6P0Q8	1798 aa		13.11	□□□□□ -0.31
CLDND1-231	ENST00000515620	XRCC5	P13010	732 aa	Known RBP	13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	BTD	P43251	543 aa		13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	PHKA1	P46020	1223 aa		13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	IRX3	P78415	501 aa	Predicted RBP	13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	PDE3A	Q14432	1141 aa		13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	ATP2B3	Q16720	1220 aa		13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	LHX8	Q68G74	356 aa		13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	DENND2A	Q9ULE3	1009 aa		13.1	□□□□□ -0.31
CLDND1-231	ENST00000515620	MYH2	Q9UKX2	1941 aa		13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	MYCN	P04198	464 aa	Predicted RBP	13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	CCL14	Q16627	93 aa		13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	CCDC184	Q52MB2	194 aa		13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	TRMT44	Q8IYL2	757 aa	Known RBP	13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	MYLIP	Q8WY64	445 aa		13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	TXNRD2	Q9NNW7	524 aa		13.09	□□□□□ -0.31
CLDND1-231	ENST00000515620	SEMA3E	O15041	775 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	TBC1D12	O60347	775 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	RFX5	P48382	616 aa	Predicted RBP	13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	ATG9A	Q7Z3C6	839 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	WDR63	Q8IWG1	891 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	ZGPAT	Q8N5A5	531 aa	Known RBP	13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	TBC1D2	Q9BYX2	928 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	SIL1	Q9H173	461 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	ABCF2	Q9UG63	623 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	PRKAG2	Q9UGJ0	569 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	ATAD5	Q96QE3	1844 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	MROH7-TTC4	A0A0A0MT08	1334 aa		13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	LAMA2	P24043	3122 aa	Known RBP	13.08	□□□□□ -0.32
CLDND1-231	ENST00000515620	USP17L5	A8MUK1	530 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	COL9A1	P20849	921 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	MAPK4	P31152	587 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	CAP2	P40123	477 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	RGS2	P41220	211 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	ATN1	P54259	1190 aa	Predicted RBP	13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	MTMR2	Q13614	643 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	SH3D19	Q5HYK7	790 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	CCAR1	Q8IX12	1150 aa	Known RBP	13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	SLF2	Q8IX21	1173 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	GPRC5A	Q8NFJ5	357 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	P2RX7	Q99572	595 aa	Known RBP	13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	APBA2	Q99767	749 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	SEMA6B	Q9H3T3	888 aa		13.07	□□□□□ -0.32
CLDND1-231	ENST00000515620	LTBP2	Q14767	1821 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	FRMPD3	Q5JV73	1810 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	FOSL2	P15408	326 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	RHBDL3	P58872	404 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	HERVK_113	P62684	666 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	RRP1B	Q14684	758 aa	Known RBP	13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	SHH	Q15465	462 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	C9orf50	Q5SZB4	431 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	GPR142	Q7Z601	462 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	USP6NL	Q92738	828 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	SYMPK	Q92797	1274 aa	Known RBP	13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	PAGR1	Q9BTK6	254 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	PORCN	Q9H237	461 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	AS3MT	Q9HBK9	375 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	TMOD4	Q9NZQ9	345 aa		13.06	□□□□□ -0.32
CLDND1-231	ENST00000515620	ADORA1	P30542	326 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	RTP1	P59025	263 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	ERVK-9	P63128	1117 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	ERVK-24	P63145	666 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	RASGRF1	Q13972	1273 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	MORN1	Q5T089	497 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	CCDC102B	Q68D86	513 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	PLEKHH3	Q7Z736	793 aa		13.05	□□□□□ -0.32
CLDND1-231	ENST00000515620	FAM163A	Q96GL9	167 aa	Predicted RBP	13.05	□□□□□ -0.32

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