RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 HOXD10P28358 340 aa16.64■□□□□ 0.25
TCOF1-215ENST00000515516 MOGSQ13724 837 aa16.64■□□□□ 0.25
TCOF1-215ENST00000515516 PDE3AQ14432 1141 aa16.64■□□□□ 0.25
TCOF1-215ENST00000515516 TTF1Q15361 905 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-215ENST00000515516 SLC9C1Q4G0N8 1177 aa16.64■□□□□ 0.25
TCOF1-215ENST00000515516 TMED8Q6PL24 325 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-215ENST00000515516 MAGEB6Q8N7X4 407 aa16.64■□□□□ 0.25
TCOF1-215ENST00000515516 COL2A1P02458 1487 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-215ENST00000515516 FMNL1O95466 1100 aaPredicted RBP16.63■□□□□ 0.25
TCOF1-215ENST00000515516 HLA-DOAP06340 250 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 USP5P45974 858 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 PRMT2P55345 433 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 GPAT2Q6NUI2 795 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 ADGRA1Q86SQ6 560 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 FOXP4Q8IVH2 680 aaPredicted RBP16.63■□□□□ 0.25
TCOF1-215ENST00000515516 ARMC5Q96C12 935 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 TMEM106CQ9BVX2 250 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 AS3MTQ9HBK9 375 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 SLC45A1Q9Y2W3 748 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 FLT1P17948 1338 aa16.63■□□□□ 0.25
TCOF1-215ENST00000515516 LAMB1P07942 1786 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 USP17L5A8MUK1 530 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 ECM2O94769 699 aaPredicted RBP16.62■□□□□ 0.25
TCOF1-215ENST00000515516 CYP2C8P10632 490 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 CAP2P40123 477 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 PSMC4P43686 418 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 DYNLL1P63167 89 aaKnown RBP16.62■□□□□ 0.25
TCOF1-215ENST00000515516 CAP1Q01518 475 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 ZNF280CQ8ND82 737 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 ARHGAP39Q9C0H5 1083 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 PTCH2Q9Y6C5 1203 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 NDUFB9Q9Y6M9 179 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 AK9Q5TCS8 1911 aa16.62■□□□□ 0.25
TCOF1-215ENST00000515516 SPP2Q13103 211 aa16.61■□□□□ 0.25
TCOF1-215ENST00000515516 PABPC4Q13310 644 aaKnown RBP eCLIP16.61■□□□□ 0.253e-6■■■■□ 20.4
TCOF1-215ENST00000515516 CCDC84Q86UT8 332 aaPredicted RBP16.61■□□□□ 0.25
TCOF1-215ENST00000515516 SIRT2Q8IXJ6 389 aa16.61■□□□□ 0.25
TCOF1-215ENST00000515516 MIGA1Q8NAN2 632 aa16.61■□□□□ 0.25
TCOF1-215ENST00000515516 SMCR8Q8TEV9 937 aaPredicted RBP16.61■□□□□ 0.25
TCOF1-215ENST00000515516 ANTXR1Q9H6X2 564 aa16.61■□□□□ 0.25
TCOF1-215ENST00000515516 SAP30BPQ9UHR5 308 aaKnown RBP16.61■□□□□ 0.25
TCOF1-215ENST00000515516 PNMA3Q9UL41 463 aa16.61■□□□□ 0.25
TCOF1-215ENST00000515516 PALD1Q9ULE6 856 aa16.61■□□□□ 0.25
TCOF1-215ENST00000515516 AGTPBP1Q9UPW5 1226 aa16.61■□□□□ 0.25
TCOF1-215ENST00000515516 FCGRTP55899 365 aa16.6■□□□□ 0.25
TCOF1-215ENST00000515516 PROCA1Q8NCQ7 364 aaPredicted RBP16.6■□□□□ 0.25
TCOF1-215ENST00000515516 DNAJC2Q99543 621 aaKnown RBP16.6■□□□□ 0.25
TCOF1-215ENST00000515516 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.6■□□□□ 0.25
TCOF1-215ENST00000515516 ASNSP08243 561 aa16.59■□□□□ 0.25
TCOF1-215ENST00000515516 SLC4A8Q2Y0W8 1093 aa16.59■□□□□ 0.25
TCOF1-215ENST00000515516 RAET1EQ8TD07 263 aa16.59■□□□□ 0.25
TCOF1-215ENST00000515516 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.59■□□□□ 0.25
TCOF1-215ENST00000515516 GINM1Q9NU53 330 aa16.59■□□□□ 0.25
TCOF1-215ENST00000515516 SRRDQ9UH36 339 aa16.59■□□□□ 0.25
TCOF1-215ENST00000515516 ADGRA2Q96PE1 1338 aa16.59■□□□□ 0.25
TCOF1-215ENST00000515516 MAGEB6P1A0A0J9YX57 407 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 GOLIM4O00461 696 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 BCRP11274 1271 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 OSBPP22059 807 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 SLC9C2Q5TAH2 1124 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 C20orf194Q5TEA3 1177 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 TTC6Q86TZ1 520 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 ZNF333Q96JL9 665 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 TRIM47Q96LD4 638 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 TMOD4Q9NZQ9 345 aa16.58■□□□□ 0.24
TCOF1-215ENST00000515516 DOCK2Q92608 1830 aa16.57■□□□□ 0.24
TCOF1-215ENST00000515516 MYPNQ86TC9 1320 aa16.57■□□□□ 0.24
TCOF1-215ENST00000515516 POTEFA5A3E0 1075 aa16.57■□□□□ 0.24
TCOF1-215ENST00000515516 HMGCS2P54868 508 aa16.57■□□□□ 0.24
TCOF1-215ENST00000515516 RRP1BQ14684 758 aaKnown RBP16.57■□□□□ 0.24
TCOF1-215ENST00000515516 METTL16Q86W50 562 aaKnown RBP16.57■□□□□ 0.24
TCOF1-215ENST00000515516 SH3TC2Q8TF17 1288 aa16.57■□□□□ 0.24
TCOF1-215ENST00000515516 WDR18Q9BV38 432 aa16.57■□□□□ 0.24
TCOF1-215ENST00000515516 LRRCC1Q9C099 1032 aa16.57■□□□□ 0.24
TCOF1-215ENST00000515516 GDF11O95390 407 aa16.56■□□□□ 0.24
TCOF1-215ENST00000515516 MYCP01106 439 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-215ENST00000515516 PDE6AP16499 860 aa16.56■□□□□ 0.24
TCOF1-215ENST00000515516 TREML2Q5T2D2 321 aa16.56■□□□□ 0.24
TCOF1-215ENST00000515516 CRNKL1Q9BZJ0 848 aaKnown RBP16.56■□□□□ 0.24
TCOF1-215ENST00000515516 BOLA2Q9H3K6 86 aa16.56■□□□□ 0.24
TCOF1-215ENST00000515516 C19orf81C9J6K1 198 aa16.55■□□□□ 0.24
TCOF1-215ENST00000515516 POLR3DP05423 398 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-215ENST00000515516 CTGFP29279 349 aa16.55■□□□□ 0.24
TCOF1-215ENST00000515516 BACE1P56817 501 aa16.55■□□□□ 0.24
TCOF1-215ENST00000515516 SH3D19Q5HYK7 790 aa16.55■□□□□ 0.24
TCOF1-215ENST00000515516 ANKRD13CQ8N6S4 541 aa16.55■□□□□ 0.24
TCOF1-215ENST00000515516 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.55■□□□□ 0.241e-6■■■□□ 16.8
TCOF1-215ENST00000515516 PAG1Q9NWQ8 432 aa16.55■□□□□ 0.24
TCOF1-215ENST00000515516 BIN2Q9UBW5 565 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-215ENST00000515516 SERPINB13Q9UIV8 391 aa16.55■□□□□ 0.24
TCOF1-215ENST00000515516 ZNF532Q9HCE3 1301 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 USP17L10C9JJH3 530 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 TNPO2O14787 897 aaKnown RBP16.54■□□□□ 0.24
TCOF1-215ENST00000515516 ATP5JP18859 108 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 EN2P19622 333 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-215ENST00000515516 GRK4P32298 578 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 GCLCP48506 637 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-215ENST00000515516 IRX3P78415 501 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-215ENST00000515516 MTMR2Q13614 643 aa16.54■□□□□ 0.24
TCOF1-215ENST00000515516 RIOK1Q9BRS2 568 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms