RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 BLOC1S2Q6QNY1 142 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 MFSD6Q6ZSS7 791 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 FAM83AQ86UY5 434 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 FAM151AQ8WW52 585 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 UPF3BQ9BZI7 483 aaKnown RBP15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 DHX36Q9H2U1 1008 aaKnown RBP15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 INCENPQ9NQS7 918 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 CYP46A1Q9Y6A2 500 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 TCP10L2B9ZVM9 353 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 ANP32AP39687 249 aaKnown RBP15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 HIRAP54198 1017 aaPredicted RBP15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 EVX2Q03828 476 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 RUFY3Q7L099 469 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 DHX32Q7L7V1 743 aaKnown RBP15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 SH3BP5LQ7L8J4 393 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 NCOA7Q8NI08 942 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 TRPM4Q8TD43 1214 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 KRT23Q9C075 422 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 CNNM2Q9H8M5 875 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 VEZTQ9HBM0 779 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 CREBZFQ9NS37 354 aa15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.39■□□□□ 0.05
LIMCH1-220ENST00000514190 ORC4O43929 436 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 HLA-DOAP06340 250 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 RPS6KB1P23443 525 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 TNNI2P48788 182 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 EXOSC10Q01780 885 aaKnown RBP15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 PDE4BQ07343 736 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 COL9A3Q14050 684 aaPredicted RBP15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 SLC4A8Q2Y0W8 1093 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 RALYLQ86SE5 291 aaKnown RBP15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 MB21D2Q8IYB1 491 aaPredicted RBP15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 STK11IPQ8N1F8 1099 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 SNX21Q969T3 373 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 DYNLL2Q96FJ2 89 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 PI4KBQ9UBF8 816 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 TAOK2Q9UL54 1235 aa15.38■□□□□ 0.05
LIMCH1-220ENST00000514190 CNTNAP1P78357 1384 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 ATRNL1Q5VV63 1379 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 ROBO3Q96MS0 1386 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 DDTLA6NHG4 134 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 ST18O60284 1047 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 CPA1P15085 419 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 NT5C2P49902 561 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 GABPAQ06546 454 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 TNFAIP1Q13829 316 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 FOXP4Q8IVH2 680 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 ZSCAN29Q8IWY8 852 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 TTC14Q96N46 770 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 EHD4Q9H223 541 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 ALDH8A1Q9H2A2 487 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 ZNF287Q9HBT7 754 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 PDRG1Q9NUG6 133 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 COL2A1P02458 1487 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 ASTN2O75129 1339 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 NEDD4P46934 1319 aa15.37■□□□□ 0.05
LIMCH1-220ENST00000514190 TMEM88BA6NKF7 163 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 B4E1Z4 1266 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 MCM5P33992 734 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 CDK8P49336 464 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 RASA3Q14644 834 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 RRP12Q5JTH9 1297 aaKnown RBP15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 C16orf86Q6ZW13 317 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 METTL16Q86W50 562 aaKnown RBP15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 JMYQ8N9B5 988 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 NKX2-3Q8TAU0 364 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 ESR2Q92731 530 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 PGAP2Q9UHJ9 254 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 SERPINB13Q9UIV8 391 aa15.36■□□□□ 0.05
LIMCH1-220ENST00000514190 BAZ2AQ9UIF9 1905 aaKnown RBP15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 KDM4AO75164 1064 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 PRDM1O75626 825 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 ANGEL2Q5VTE6 544 aaKnown RBP15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 CYB5R4Q7L1T6 521 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 APOBEC3FQ8IUX4 373 aaKnown RBP15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 SLC44A5Q8NCS7 719 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 ZC3H15Q8WU90 426 aaKnown RBP15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 MKNK2Q9HBH9 465 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 TOMM22Q9NS69 142 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 ZSWIM5Q9P217 1185 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 WDR19Q8NEZ3 1342 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 CDK5RAP2Q96SN8 1893 aa15.35■□□□□ 0.05
LIMCH1-220ENST00000514190 PRC1O43663 620 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 MCM2P49736 904 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 ANTXR2P58335 489 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 ZNF444Q8N0Y2 327 aaPredicted RBP15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 FBXL16Q8N461 479 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 TCEANC2Q96MN5 208 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 CSRNP1Q96S65 589 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 TMEM39BQ9GZU3 492 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 DEFB129Q9H1M3 183 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 SWAP70Q9UH65 585 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 PITPNM2Q9BZ72 1349 aa15.34■□□□□ 0.05
LIMCH1-220ENST00000514190 FOCADQ5VW36 1801 aa15.33■□□□□ 0.05
LIMCH1-220ENST00000514190 RANBP6O60518 1105 aaKnown RBP15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 CD2BP2O95400 341 aaKnown RBP15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 AK2P54819 239 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 ANKRD1Q15327 319 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 CHST3Q7LGC8 479 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 CRACR2BQ8N4Y2 399 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms