RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 OTUD5Q96G74 571 aa11.77□□□□□ -0.53
RNF4-221ENST00000513643 EHD4Q9H223 541 aa11.77□□□□□ -0.53
RNF4-221ENST00000513643 PALD1Q9ULE6 856 aa11.77□□□□□ -0.53
RNF4-221ENST00000513643 MAGEB6P1A0A0J9YX57 407 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 GPR25O00155 361 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 CETPP11597 493 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 CAP2P40123 477 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 JAG1P78504 1218 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 GABPAQ06546 454 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 SNAPC2Q13487 334 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 ANKRD45Q5TZF3 282 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 TSHZ3Q63HK5 1081 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 TATDN1Q6P1N9 297 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 FAM43AQ8N2R8 423 aa11.76□□□□□ -0.53
RNF4-221ENST00000513643 RWDD1Q9H446 243 aaPredicted RBP11.76□□□□□ -0.53
RNF4-221ENST00000513643 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.76□□□□□ -0.53
RNF4-221ENST00000513643 SIPA1L1O43166 1804 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 FOCADQ5VW36 1801 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 CDK5RAP2Q96SN8 1893 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 CCL15-CCL14A0A0B4J2E2 113 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 FAM196BA6NMK8 535 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 BTBD19C9JJ37 291 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 GLRX3O76003 335 aaKnown RBP11.75□□□□□ -0.53
RNF4-221ENST00000513643 MX1P20591 662 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 CCL15Q16663 113 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 IFFO2Q5TF58 517 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 GPAT2Q6NUI2 795 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 LCORLQ8N3X6 602 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 ZNF296Q8WUU4 475 aaPredicted RBP11.75□□□□□ -0.53
RNF4-221ENST00000513643 GPATCH3Q96I76 525 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.75□□□□□ -0.53
RNF4-221ENST00000513643 PUS7LQ9H0K6 701 aaKnown RBP11.75□□□□□ -0.53
RNF4-221ENST00000513643 DCP1AQ9NPI6 582 aaPredicted RBP11.75□□□□□ -0.53
RNF4-221ENST00000513643 GINM1Q9NU53 330 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 TAOK2Q9UL54 1235 aa11.75□□□□□ -0.53
RNF4-221ENST00000513643 CASP8AP2Q9UKL3 1982 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 A0A0G2JLL6 359 aaPredicted RBP11.74□□□□□ -0.53
RNF4-221ENST00000513643 PLCD1P51178 756 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 PDE1AP54750 535 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 NUCB1Q02818 461 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 CRHR2Q13324 411 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 OTUD7BQ6GQQ9 843 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 ZSCAN25Q6NSZ9 544 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 PRRT2Q7Z6L0 340 aaPredicted RBP11.74□□□□□ -0.53
RNF4-221ENST00000513643 ANKRD23Q86SG2 305 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 TICAM2Q86XR7 235 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 TNS4Q8IZW8 715 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 OSBP2Q969R2 916 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 STRBPQ96SI9 672 aaKnown RBP11.74□□□□□ -0.53
RNF4-221ENST00000513643 WDR18Q9BV38 432 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 OSBPL3Q9H4L5 887 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 ZHX2Q9Y6X8 837 aa11.74□□□□□ -0.53
RNF4-221ENST00000513643 ERC2O15083 957 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 RNF113AO15541 343 aaKnown RBP11.73□□□□□ -0.53
RNF4-221ENST00000513643 PRKAB2O43741 272 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 MBD4O95243 580 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 ZFYP08048 801 aaPredicted RBP11.73□□□□□ -0.53
RNF4-221ENST00000513643 CENPFP49454 3210 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 AK9Q5TCS8 1911 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 TTC6Q86TZ1 520 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 ADGRA2Q96PE1 1338 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 TBC1D2Q9BYX2 928 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 CRNKL1Q9BZJ0 848 aaKnown RBP11.73□□□□□ -0.53
RNF4-221ENST00000513643 ARMT1Q9H993 441 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 ATP8A2Q9NTI2 1148 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.73□□□□□ -0.53
RNF4-221ENST00000513643 SAP30BPQ9UHR5 308 aaKnown RBP11.73□□□□□ -0.53
RNF4-221ENST00000513643 SERPINB13Q9UIV8 391 aa11.73□□□□□ -0.53
RNF4-221ENST00000513643 DDX60LQ5H9U9 1706 aaKnown RBP11.72□□□□□ -0.53
RNF4-221ENST00000513643 HLA-DOAP06340 250 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 SHMT1P34896 483 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 USP5P45974 858 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 CAP1Q01518 475 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 EVX2Q03828 476 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 SH3D19Q5HYK7 790 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 CHD1LQ86WJ1 897 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 SDR42E1Q8WUS8 393 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 APPBP2Q92624 585 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 BCL11AQ9H165 835 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 PICK1Q9NRD5 415 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.72□□□□□ -0.53
RNF4-221ENST00000513643 SLC45A1Q9Y2W3 748 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 PHIPQ8WWQ0 1821 aa11.72□□□□□ -0.53
RNF4-221ENST00000513643 USP17L5A8MUK1 530 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 GSG1L2A8MUP6 293 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 TLR2O60603 784 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 FKTNO75072 461 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 ASNSP08243 561 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 SHROOM1Q2M3G4 852 aaPredicted RBP11.71□□□□□ -0.53
RNF4-221ENST00000513643 ZMYM1Q5SVZ6 1142 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 C12orf60Q5U649 245 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 GIMAP6Q6P9H5 292 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 C17orf99Q6UX52 265 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 FASTKD5Q7L8L6 764 aaKnown RBP11.71□□□□□ -0.53
RNF4-221ENST00000513643 CCDC84Q86UT8 332 aaPredicted RBP11.71□□□□□ -0.53
RNF4-221ENST00000513643 PLEKHM2Q8IWE5 1019 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 ZNF280CQ8ND82 737 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 MCOLN1Q9GZU1 580 aa11.71□□□□□ -0.53
RNF4-221ENST00000513643 SMIM22K7EJ46 135 aa11.7□□□□□ -0.54
RNF4-221ENST00000513643 PDHXO00330 501 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms