RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 BCAS4Q8TDM0 211 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 DHX58Q96C10 678 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 ANKRD44Q8N8A2 993 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 LMBR1Q8WVP7 490 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 CARD6Q9BX69 1037 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 PALMDQ9NP74 551 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 USP19O94966 1318 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 E9PCH4 1651 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 KRT13P13646 458 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 PPP1R21Q6ZMI0 780 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 MFSD6Q6ZSS7 791 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 RMND1Q9NWS8 449 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 SCOCQ9UIL1 159 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 LOC102724159A0A0B4J2E5 919 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 CLTAP09496 248 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 IL2RBP14784 551 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 MX2P20592 715 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 DYNC1I2Q13409 638 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 PWP2Q15269 919 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 PYM1Q9BRP8 204 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 ZC3H12CQ9C0D7 883 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 ZBTB43O43298 467 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 PPARDQ03181 441 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 CALCOCO2Q13137 446 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 INF2Q27J81 1249 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 CCDC122Q5T0U0 273 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 MMS22LQ6ZRQ5 1243 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 JAKMIP2Q96AA8 810 aa9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 POLR3AO14802 1390 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-218ENST00000513024 PSMA7O14818 248 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 HSPA1LP34931 641 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 STAT6P42226 847 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 TRAPPC8Q9Y2L5 1435 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 HGSO14964 777 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 KCNA6P17658 529 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 FBLN1P23142 703 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 SATB1Q01826 763 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 E2F5Q15329 346 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 TTC19Q6DKK2 380 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 CHST3Q7LGC8 479 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 ZBTB3Q9H5J0 574 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 ATG3Q9NT62 314 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 SHROOM2Q13796 1616 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 TSPY2A6NKD2 308 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 H0YIN7 160 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 WASLO00401 505 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 NBPF7P0C2Y1 421 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 IRX1P78414 480 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 NCAPGQ9BPX3 1015 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 DDX21Q9NR30 783 aaKnown RBP eCLIP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 SLC5A4Q9NY91 659 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 PRKAG2Q9UGJ0 569 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 PLCH2O75038 1416 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 PDCD2Q16342 344 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 CCDC152Q4G0S7 254 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 ANKRD20A3Q5VUR7 823 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 LDHAL6AQ6ZMR3 332 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 SYCP3Q8IZU3 236 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 ARHGAP45Q92619 1136 aa9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 BAG1Q99933 345 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-218ENST00000513024 RNF40O75150 1001 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 CPA1P15085 419 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 PSMD7P51665 324 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 TAOK1Q7L7X3 1001 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 RGS22Q8NE09 1264 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 QTRT2Q9H974 415 aaKnown RBP9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 A0A1B0GVL5 298 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 GNGT1P63211 74 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 UBXN1Q04323 297 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 FAM173BQ6P4H8 233 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 NUB1Q9Y5A7 615 aa9.71□□□□□ -0.85
LIMCH1-218ENST00000513024 GPTP24298 496 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 RBM17Q96I25 401 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 TTC21AQ8NDW8 1320 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 MAN1A2O60476 641 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 BRD3Q15059 726 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 CLUL1Q15846 466 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 CCDC25Q86WR0 208 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 FERMT2Q96AC1 680 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 HVCN1Q96D96 273 aa9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 INTS4Q96HW7 963 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-218ENST00000513024 DTNBO60941 627 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 ASIC1P78348 528 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 WTAPQ15007 396 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 GJA3Q9Y6H8 435 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 SESN3P58005 492 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 FBXO31Q5XUX0 539 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 CCDC26Q8TAB7 109 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 USP26Q9BXU7 913 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 SYNCQ9H7C4 482 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 CCNL1Q9UK58 526 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 PABPN1LA6NDY0 278 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 PPP1R12AO14974 1030 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 HNRNPCP07910 306 aaKnown RBP eCLIP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 ARL1P40616 181 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 ESRRGP62508 458 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 FBXO41Q8TF61 875 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 IWS1Q96ST2 819 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 ZNF408Q9H9D4 720 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 STX8Q9UNK0 236 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms