RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 OSBPP22059 807 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 GSTO1P78417 241 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 MTFR1Q15390 333 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 CCDC158Q5M9N0 1113 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 NAA16Q6N069 864 aaPredicted RBP13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 GADL1Q6ZQY3 521 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 MAPKAPK5Q8IW41 473 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 TEX11Q8IYF3 940 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 TGFBRAP1Q8WUH2 860 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 DNAJC18Q9H819 358 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 PICK1Q9NRD5 415 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 PALD1Q9ULE6 856 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 GABRQQ9UN88 632 aa13.72□□□□□ -0.21
LIMCH1-214ENST00000512228 FOCADQ5VW36 1801 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 BRCA2P51587 3418 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 PEX10O60683 326 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 CAP2P40123 477 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 SPP2Q13103 211 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 SLC4A8Q2Y0W8 1093 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 SLC9C1Q4G0N8 1177 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 IL1RAPL2Q9NP60 686 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 SRRDQ9UH36 339 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 COG6Q9Y2V7 657 aa13.71□□□□□ -0.21
LIMCH1-214ENST00000512228 SLC34A2O95436 690 aa13.7□□□□□ -0.22
LIMCH1-214ENST00000512228 C20orf194Q5TEA3 1177 aa13.7□□□□□ -0.22
LIMCH1-214ENST00000512228 FASTKD5Q7L8L6 764 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-214ENST00000512228 MIGA1Q8NAN2 632 aa13.7□□□□□ -0.22
LIMCH1-214ENST00000512228 SAP30BPQ9UHR5 308 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-214ENST00000512228 MKI67P46013 3256 aaKnown RBP13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 FMNL1O95466 1100 aaPredicted RBP13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 CYP7A1P22680 504 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 EVX2Q03828 476 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 PRKCZQ05513 592 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 SLFNL1Q499Z3 407 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 POTEEQ6S8J3 1075 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 AACSQ86V21 672 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 ZBTB40Q9NUA8 1239 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 PI4KBQ9UBF8 816 aa13.69□□□□□ -0.22
LIMCH1-214ENST00000512228 MYH1P12882 1939 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 FLT1P17948 1338 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 APBB1O00213 710 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 MAP4K4O95819 1239 aaPredicted RBP13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 HMGCS2P54868 508 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 KIF22Q14807 665 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 PRPF38BQ5VTL8 546 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 METTL16Q86W50 562 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 MAGEB6Q8N7X4 407 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 ZNF280CQ8ND82 737 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 RHPN1Q8TCX5 695 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 PARK7Q99497 189 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 MAST2Q6P0Q8 1798 aa13.68□□□□□ -0.22
LIMCH1-214ENST00000512228 COL2A1P02458 1487 aaPredicted RBP13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 IDH1O75874 414 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 GNRH1P01148 92 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 CHGBP05060 677 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 ARHGEF6Q15052 776 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 NBPF11Q86T75 865 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 ANKRD13CQ8N6S4 541 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 SHISA4Q96DD7 197 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 EDC3Q96F86 508 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 TMEM106CQ9BVX2 250 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 BCL11AQ9H165 835 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 AGTPBP1Q9UPW5 1226 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 SLC45A1Q9Y2W3 748 aa13.67□□□□□ -0.22
LIMCH1-214ENST00000512228 MYPNQ86TC9 1320 aa13.66□□□□□ -0.22
LIMCH1-214ENST00000512228 LOC285556D6RIA3 1793 aa13.66□□□□□ -0.22
LIMCH1-214ENST00000512228 USP17L5A8MUK1 530 aa13.66□□□□□ -0.22
LIMCH1-214ENST00000512228 GDF11O95390 407 aa13.66□□□□□ -0.22
LIMCH1-214ENST00000512228 BAG3O95817 575 aa13.66□□□□□ -0.22
LIMCH1-214ENST00000512228 FOXP4Q8IVH2 680 aaPredicted RBP13.66□□□□□ -0.22
LIMCH1-214ENST00000512228 SMIM22K7EJ46 135 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 ELNP15502 786 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 GRK4P32298 578 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 FLT3LGP49771 235 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 PLCD1P51178 756 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 PRMT2P55345 433 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 SH3D19Q5HYK7 790 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 RAET1EQ8TD07 263 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 RIOK1Q9BRS2 568 aaKnown RBP13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 HERC5Q9UII4 1024 aaKnown RBP13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 RCAN3Q9UKA8 241 aa13.65□□□□□ -0.22
LIMCH1-214ENST00000512228 PLXNB2O15031 1838 aa13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 FCGRTP55899 365 aa13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 MTMR2Q13614 643 aa13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 RPAP2Q8IXW5 612 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 PROCA1Q8NCQ7 364 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 P2RX7Q99572 595 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 NOL10Q9BSC4 688 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 WDR18Q9BV38 432 aa13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 UNC93B1Q9H1C4 597 aa13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 ASCC2Q9H1I8 757 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 DHX36Q9H2U1 1008 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 TXNRD2Q9NNW7 524 aa13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 EMILIN3Q9NT22 766 aa13.64□□□□□ -0.23
LIMCH1-214ENST00000512228 TCRBV5S4A2TA0A5A2 114 aa13.63□□□□□ -0.23
LIMCH1-214ENST00000512228 CCL5P13501 91 aa13.63□□□□□ -0.23
LIMCH1-214ENST00000512228 PLCG2P16885 1265 aa13.63□□□□□ -0.23
LIMCH1-214ENST00000512228 HOXD10P28358 340 aa13.63□□□□□ -0.23
LIMCH1-214ENST00000512228 BACE1P56817 501 aa13.63□□□□□ -0.23
LIMCH1-214ENST00000512228 Q3C1V9 767 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms