RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	CHD7	Q9P2D1	2997 aa		11.45	□□□□□ -0.58
UBE2D3-223	ENST00000508249	MAST3	O60307	1309 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	MROH5	Q6ZUA9	1318 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	UBTFL1	P0CB47	393 aa	Predicted RBP	11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	PRDX5	P30044	214 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	MDM2	Q00987	491 aa	Predicted RBP	11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	GADL1	Q6ZQY3	521 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	FASTKD5	Q7L8L6	764 aa	Known RBP	11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	ANKRD44	Q8N8A2	993 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	USP44	Q9H0E7	712 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	TAOK2	Q9UL54	1235 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	AGTPBP1	Q9UPW5	1226 aa		11.44	□□□□□ -0.58
UBE2D3-223	ENST00000508249	PDE8B	O95263	885 aa		11.43	□□□□□ -0.58
UBE2D3-223	ENST00000508249	TRIM27	P14373	513 aa		11.43	□□□□□ -0.58
UBE2D3-223	ENST00000508249	FTSJ3	Q8IY81	847 aa	Known RBP	11.43	□□□□□ -0.58
UBE2D3-223	ENST00000508249	SMCR8	Q8TEV9	937 aa	Predicted RBP	11.43	□□□□□ -0.58
UBE2D3-223	ENST00000508249	RAPGEFL1	Q9UHV5	662 aa		11.43	□□□□□ -0.58
UBE2D3-223	ENST00000508249	FBXO3	Q9UK99	471 aa		11.43	□□□□□ -0.58
UBE2D3-223	ENST00000508249	FOCAD	Q5VW36	1801 aa		11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	DDTL	A6NHG4	134 aa	Predicted RBP	11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	BCAR3	O75815	825 aa		11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	LHX8	Q68G74	356 aa		11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	KLHDC4	Q8TBB5	520 aa		11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	FRAT1	Q92837	279 aa	Predicted RBP	11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	COA7	Q96BR5	231 aa		11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	CDX2	Q99626	313 aa	Predicted RBP	11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	BICC1	Q9H694	974 aa	Known RBP	11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	HMX1	Q9NP08	348 aa	Predicted RBP	11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	DDX4	Q9NQI0	724 aa	Known RBP	11.42	□□□□□ -0.58
UBE2D3-223	ENST00000508249	TRIM75P	A6NK02	468 aa		11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	PEX10	O60683	326 aa		11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	PRKAR2A	P13861	404 aa	Known RBP	11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	RGS3	P49796	1198 aa		11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	POTEE	Q6S8J3	1075 aa		11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	VPS37D	Q86XT2	251 aa		11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	MAFA	Q8NHW3	353 aa	Predicted RBP	11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	IDI2	Q9BXS1	227 aa		11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	TTYH1	Q9H313	450 aa	Predicted RBP	11.41	□□□□□ -0.58
UBE2D3-223	ENST00000508249	BDP1	A6H8Y1	2624 aa		11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	GAK	O14976	1311 aa		11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	COL9A1	P20849	921 aa		11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	RRP1B	Q14684	758 aa	Known RBP	11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	CAVIN4	Q5BKX8	364 aa		11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	METTL24	Q5JXM2	366 aa		11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	USP6NL	Q92738	828 aa		11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	CHMP4B	Q9H444	224 aa	Known RBP	11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	MORF4L1	Q9UBU8	362 aa		11.4	□□□□□ -0.58
UBE2D3-223	ENST00000508249	CCND3	P30281	292 aa	Predicted RBP	11.39	□□□□□ -0.59
UBE2D3-223	ENST00000508249	USP38	Q8NB14	1042 aa		11.39	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.39	□□□□□ -0.59
UBE2D3-223	ENST00000508249	MYLIP	Q8WY64	445 aa		11.39	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PICK1	Q9NRD5	415 aa		11.39	□□□□□ -0.59
UBE2D3-223	ENST00000508249	USP40	Q9NVE5	1235 aa		11.39	□□□□□ -0.59
UBE2D3-223	ENST00000508249	RCAN3	Q9UKA8	241 aa		11.39	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SALL1	Q9NSC2	1324 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ZNF236	Q9UL36	1845 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	FAM196B	A6NMK8	535 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	CTNND1	O60716	968 aa	Known RBP	11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ENTPD3	O75355	529 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	FRAT2	O75474	233 aa	Predicted RBP	11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	GNAI2	P04899	355 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	RFX5	P48382	616 aa	Predicted RBP	11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	CACNB2	Q08289	660 aa	Predicted RBP	11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	MTX1	Q13505	466 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PUM3	Q15397	648 aa	Known RBP	11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	CCL14	Q16627	93 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	C9orf50	Q5SZB4	431 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ZNF697	Q5TEC3	545 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	WDR66	Q8TBY9	1149 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ASCC2	Q9H1I8	757 aa	Predicted RBP	11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SEMA6B	Q9H3T3	888 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	TXNRD2	Q9NNW7	524 aa		11.38	□□□□□ -0.59
UBE2D3-223	ENST00000508249	CIAO1	O76071	339 aa		11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249	GCLC	P48506	637 aa	Predicted RBP	11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249	TMEM57	Q8N5G2	664 aa		11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ZNF384	Q8TF68	577 aa		11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249	CLUAP1	Q96AJ1	413 aa		11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249	MEIS3	Q99687	375 aa		11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PNMA3	Q9UL41	463 aa		11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249	LRRFIP2	Q9Y608	721 aa	Known RBP	11.37	□□□□□ -0.59
UBE2D3-223	ENST00000508249		A0A0G2JMZ2	1700 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	EYA2	O00167	538 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	XRCC5	P13010	732 aa	Known RBP	11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	CYP2B6	P20813	491 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	HMGCS2	P54868	508 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	RHBDL3	P58872	404 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SHH	Q15465	462 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SH3D19	Q5HYK7	790 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ATG9A	Q7Z3C6	839 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	COPRS	Q9NQ92	184 aa		11.36	□□□□□ -0.59
UBE2D3-223	ENST00000508249	NCOR1	O75376	2440 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	TRANK1	O15050	2925 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ZBTB22	O15209	634 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	IGHA2	P01877	340 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	IL15	P40933	162 aa	Predicted RBP	11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	JAG1	P78504	1218 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SPP2	Q13103	211 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PDE3A	Q14432	1141 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	MORN1	Q5T089	497 aa		11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms