RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PRR23D1E9PI22 279 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 SART1O43290 800 aaKnown RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 DKC1O60832 514 aaKnown RBP eCLIP6.47□□□□□ -1.37
USF3-204ENST00000496826 PRR23D2P0DMB1 279 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 TNNC1P63316 161 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 TCEAL5Q5H9L2 206 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 CCDC151A5D8V7 595 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 DNAJC6O75061 913 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 NOL8Q76FK4 1167 aaKnown RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 GSTA5Q7RTV2 222 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 SMG6Q86US8 1419 aaKnown RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 RPAP2Q8IXW5 612 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 RABGGTAQ92696 567 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 CCDC177Q9NQR7 707 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 DONSONQ9NYP3 566 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 PIP4K2BP78356 416 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 ATP2B2Q01814 1243 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 TTLL12Q14166 644 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 NAA25Q14CX7 972 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 TRIP4Q15650 581 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 KIFC2Q96AC6 838 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 ARL8AQ96BM9 186 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 OLFM1Q99784 485 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 USP26Q9BXU7 913 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 TSGA10Q9BZW7 698 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 SELENONQ9NZV5 590 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 GOLGA8KD6RF30 607 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 CHUKO15111 745 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 TNNT1P13805 278 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 MAIP1Q8WWC4 291 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 P3H4Q92791 437 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 WBP4O75554 376 aaKnown RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 HEXIM1O94992 359 aaKnown RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 SERPINB10P48595 397 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 NDUFA5Q16718 116 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 COG4Q9H9E3 785 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 ARHGAP10A1A4S6 786 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 LMNB1P20700 586 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 E2F5Q15329 346 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 NCAPG2Q86XI2 1143 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 BBS5Q8N3I7 341 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 EPAS1Q99814 870 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 PRDM5Q9NQX1 630 aaPredicted RBP6.46□□□□□ -1.37
USF3-204ENST00000496826 IQCA1LA6NCM1 817 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 PTGES3LE9PB15 166 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 TAF4O00268 1085 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 POLR2DO15514 142 aaKnown RBP6.46□□□□□ -1.37
USF3-204ENST00000496826 BAG3O95817 575 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 NNTQ13423 1086 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 VWA3BQ502W6 1294 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 PDZD8Q8NEN9 1154 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 MRPS27Q92552 414 aaKnown RBP6.46□□□□□ -1.37
USF3-204ENST00000496826 CSRNP1Q96S65 589 aa6.46□□□□□ -1.37
USF3-204ENST00000496826 SRPRBQ9Y5M8 271 aaKnown RBP6.46□□□□□ -1.37
USF3-204ENST00000496826 NEK4P51957 841 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 RBM5P52756 815 aaKnown RBP eCLIP6.46□□□□□ -1.38
USF3-204ENST00000496826 NDUFAF2Q8N183 169 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 EXD1Q8NHP7 514 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 NACA2Q9H009 215 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 LRRIQ3A6PVS8 624 aaPredicted RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 TTI1O43156 1089 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 ZNF189O75820 626 aaPredicted RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 PPP1R2P41236 205 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 ZSCAN30Q86W11 494 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 SMAP1Q8IYB5 467 aaPredicted RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 CDC5LQ99459 802 aaKnown RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 TNMDQ9H2S6 317 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 GEMIN8Q9NWZ8 242 aaKnown RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 FBXL5Q9UKA1 691 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 ZBTB12Q9Y330 459 aaPredicted RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 RSBN1LQ6PCB5 846 aaPredicted RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 MMS22LQ6ZRQ5 1243 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 RASEFQ8IZ41 740 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 GIPC2Q8TF65 315 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 SUCLA2Q9P2R7 463 aaPredicted RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 RHOBTB1O94844 696 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 S100A9P06702 114 aaKnown RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 YWHAEP62258 255 aaKnown RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 TYRO3Q06418 890 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 PPP2R5EQ16537 467 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 CEP55Q53EZ4 464 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 VTI1AQ96AJ9 217 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 NUP58Q9BVL2 599 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 PLCL2Q9UPR0 1127 aa6.46□□□□□ -1.38
USF3-204ENST00000496826 WDR33Q9C0J8 1336 aaKnown RBP6.46□□□□□ -1.38
USF3-204ENST00000496826 VAV2P52735 878 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 RNASELQ05823 741 aaKnown RBP6.45□□□□□ -1.38
USF3-204ENST00000496826 BFSP1Q12934 665 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 TUBB2AQ13885 445 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 ZC3H12BQ5HYM0 836 aaKnown RBP6.45□□□□□ -1.38
USF3-204ENST00000496826 ZNF544Q6NX49 715 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 RAB44Q7Z6P3 723 aaPredicted RBP6.45□□□□□ -1.38
USF3-204ENST00000496826 CEP70Q8NHQ1 597 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 MGARPQ8TDB4 240 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 ARHGAP45Q92619 1136 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 ZBED2Q9BTP6 218 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 TUBB2BQ9BVA1 445 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 LMCD1Q9NZU5 365 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 RNF14Q9UBS8 474 aa6.45□□□□□ -1.38
USF3-204ENST00000496826 BRD4O60885 1362 aaPredicted RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms