RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 MORF4L1Q9UBU8 362 aa17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 SALL2Q9Y467 1007 aaPredicted RBP17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 FRMPD3Q5JV73 1810 aa17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 PFASO15067 1338 aa17.75■□□□□ 0.43
PRPF40A-211ENST00000493468 FAM109BQ6ICB4 259 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-211ENST00000493468 TRIB2Q92519 343 aa17.75■□□□□ 0.43
PRPF40A-211ENST00000493468 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-211ENST00000493468 MAST2Q6P0Q8 1798 aa17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 COL6A1P12109 1028 aa17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 PHKA1P46020 1223 aa17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 TRIM32Q13049 653 aa17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 CCDC84Q86UT8 332 aaPredicted RBP17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 DZIP1Q86YF9 867 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 MRPL50Q8N5N7 158 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 ZNF280CQ8ND82 737 aa17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 CEP126Q9P2H0 1117 aa17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 LAMA2P24043 3122 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-211ENST00000493468 MROH7-TTC4A0A0A0MT08 1334 aa17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 SLURP2P0DP57 97 aa17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 XRCC5P13010 732 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 BTDP43251 543 aa17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 SPP2Q13103 211 aa17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 SH3D19Q5HYK7 790 aa17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 ASCC2Q9H1I8 757 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-211ENST00000493468 MAP4K4O95819 1239 aaPredicted RBP17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 PRKAR2AP13861 404 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 HMGCS2P54868 508 aa17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 RHBDL3P58872 404 aa17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 PICALMQ13492 652 aa17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 SPTY2D1Q68D10 685 aaPredicted RBP17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 TRMT44Q8IYL2 757 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 SOCS4Q8WXH5 440 aa17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 MRS2Q9HD23 443 aa17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 VCANP13611 3396 aa17.72■□□□□ 0.43
PRPF40A-211ENST00000493468 GPR75-ASB3A0A0A6YYF3 556 aa17.71■□□□□ 0.43
PRPF40A-211ENST00000493468 POTEB2H3BUK9 544 aa17.71■□□□□ 0.43
PRPF40A-211ENST00000493468 CCDC102BQ68D86 513 aa17.71■□□□□ 0.43
PRPF40A-211ENST00000493468 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.71■□□□□ 0.43
PRPF40A-211ENST00000493468 CAP2P40123 477 aa17.7■□□□□ 0.42
PRPF40A-211ENST00000493468 IL15P40933 162 aaPredicted RBP17.7■□□□□ 0.42
PRPF40A-211ENST00000493468 RASGRF1Q13972 1273 aa17.7■□□□□ 0.42
PRPF40A-211ENST00000493468 NUDT12Q9BQG2 462 aa17.7■□□□□ 0.42
PRPF40A-211ENST00000493468 AS3MTQ9HBK9 375 aa17.7■□□□□ 0.42
PRPF40A-211ENST00000493468 SIPA1L1O43166 1804 aa17.7■□□□□ 0.42
PRPF40A-211ENST00000493468 DNAH12Q6ZR08 3092 aa17.69■□□□□ 0.42
PRPF40A-211ENST00000493468 USP17L5A8MUK1 530 aa17.69■□□□□ 0.42
PRPF40A-211ENST00000493468 HOXA7P31268 230 aaPredicted RBP17.69■□□□□ 0.42
PRPF40A-211ENST00000493468 GUCD1Q96NT3 240 aa17.69■□□□□ 0.42
PRPF40A-211ENST00000493468 SIL1Q9H173 461 aa17.69■□□□□ 0.42
PRPF40A-211ENST00000493468 ABCF2Q9UG63 623 aa17.69■□□□□ 0.42
PRPF40A-211ENST00000493468 LTBP2Q14767 1821 aa17.68■□□□□ 0.42
PRPF40A-211ENST00000493468 FAM196BA6NMK8 535 aa17.68■□□□□ 0.42
PRPF40A-211ENST00000493468 CYP2B6P20813 491 aa17.68■□□□□ 0.42
PRPF40A-211ENST00000493468 LRRC26Q2I0M4 334 aa17.68■□□□□ 0.42
PRPF40A-211ENST00000493468 WDR18Q9BV38 432 aa17.68■□□□□ 0.42
PRPF40A-211ENST00000493468 SPTBN5Q9NRC6 3674 aaKnown RBP17.68■□□□□ 0.42
PRPF40A-211ENST00000493468 HERC5Q9UII4 1024 aaKnown RBP17.68■□□□□ 0.42
PRPF40A-211ENST00000493468 EYSQ5T1H1 3165 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 ZKSCAN1P17029 563 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 ADORA1P30542 326 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 MAPK4P31152 587 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 IRX3P78415 501 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 MECOMQ03112 1051 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 CACNB2Q08289 660 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 LHX8Q68G74 356 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 GPRC5AQ8NFJ5 357 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 ZNF384Q8TF68 577 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 USP6NLQ92738 828 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 FOCADQ5VW36 1801 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 ZNF521Q96K83 1311 aa17.67■□□□□ 0.42
PRPF40A-211ENST00000493468 BACE1P56817 501 aa17.66■□□□□ 0.42
PRPF40A-211ENST00000493468 MDM2Q00987 491 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-211ENST00000493468 PDE3AQ14432 1141 aa17.66■□□□□ 0.42
PRPF40A-211ENST00000493468 ERICH6Q7L0X2 663 aa17.66■□□□□ 0.42
PRPF40A-211ENST00000493468 GTF3C2Q8WUA4 911 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-211ENST00000493468 COPRSQ9NQ92 184 aa17.66■□□□□ 0.42
PRPF40A-211ENST00000493468 CDK5RAP2Q96SN8 1893 aa17.66■□□□□ 0.42
PRPF40A-211ENST00000493468 UBTFL1P0CB47 393 aaPredicted RBP17.65■□□□□ 0.42
PRPF40A-211ENST00000493468 RGS2P41220 211 aa17.65■□□□□ 0.42
PRPF40A-211ENST00000493468 HERVK_113P62684 666 aa17.65■□□□□ 0.42
PRPF40A-211ENST00000493468 GSTO1P78417 241 aa17.65■□□□□ 0.42
PRPF40A-211ENST00000493468 RRP1BQ14684 758 aaKnown RBP17.65■□□□□ 0.42
PRPF40A-211ENST00000493468 APBA2Q99767 749 aa17.65■□□□□ 0.42
PRPF40A-211ENST00000493468 TXNRD2Q9NNW7 524 aa17.65■□□□□ 0.42
PRPF40A-211ENST00000493468 LDHCP07864 332 aa17.64■□□□□ 0.41
PRPF40A-211ENST00000493468 ASNSP08243 561 aa17.64■□□□□ 0.41
PRPF40A-211ENST00000493468 MTMR2Q13614 643 aa17.64■□□□□ 0.41
PRPF40A-211ENST00000493468 MORN1Q5T089 497 aa17.64■□□□□ 0.41
PRPF40A-211ENST00000493468 SSH1Q8WYL5 1049 aa17.64■□□□□ 0.41
PRPF40A-211ENST00000493468 P2RX7Q99572 595 aaKnown RBP17.64■□□□□ 0.41
PRPF40A-211ENST00000493468 TMOD4Q9NZQ9 345 aa17.64■□□□□ 0.41
PRPF40A-211ENST00000493468 C19orf81C9J6K1 198 aa17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 CCND3P30281 292 aaPredicted RBP17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 ERVK-9P63128 1117 aa17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 ERVK-24P63145 666 aa17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 MVPQ14764 893 aaKnown RBP17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 ZNF697Q5TEC3 545 aa17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 NSUN4Q96CB9 384 aaKnown RBP17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 GINM1Q9NU53 330 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms