RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 BEGAINQ9BUH8 593 aa19.6■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 HERC5Q9UII4 1024 aaKnown RBP19.6■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 SPDYE5A6NIY4 337 aa19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 FAM196BA6NMK8 535 aa19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 SLC4A8Q2Y0W8 1093 aa19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 ERO1BQ86YB8 467 aa19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 CNKSR2Q8WXI2 1034 aa19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 TRIM34Q9BYJ4 488 aa19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 DCP1AQ9NPI6 582 aaPredicted RBP19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 LAMB1P07942 1786 aa19.59■□□□□ 0.73
MSH5-SAPCD1-206ENST00000491552 MANSC4A6NHS7 340 aaPredicted RBP19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 TRIM6-TRIM34B2RNG4 842 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 PRKAB2O43741 272 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 SREBF2Q12772 1141 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CENPQQ7L2Z9 268 aaPredicted RBP19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 TTC6Q86TZ1 520 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 METTL16Q86W50 562 aaKnown RBP19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 SCYL3Q8IZE3 742 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CRACR2BQ8N4Y2 399 aaPredicted RBP19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 OTUD5Q96G74 571 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 ATP8A2Q9NTI2 1148 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 SLC4A4Q9Y6R1 1079 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 DOCK1Q14185 1865 aa19.58■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 M0R2C6 588 aa19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CTNND1O60716 968 aaKnown RBP19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 POLR3DP05423 398 aaPredicted RBP19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 ZMYM1Q5SVZ6 1142 aa19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 FOXP4Q8IVH2 680 aaPredicted RBP19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 RILPL2Q969X0 211 aa19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 STRBPQ96SI9 672 aaKnown RBP19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 MCM9Q9NXL9 1143 aa19.57■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 FOXN1O15353 648 aa19.56■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 GPAA1O43292 621 aa19.56■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 TICAM2Q86XR7 235 aa19.56■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 DDRGK1Q96HY6 314 aa19.56■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 EHD4Q9H223 541 aa19.56■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 DNAJC18Q9H819 358 aa19.56■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 PICK1Q9NRD5 415 aa19.56■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CA12O43570 354 aa19.55■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 TM4SF4P48230 202 aa19.55■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 PPATQ06203 517 aa19.55■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 PPIL2Q13356 520 aa19.55■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 SEC62Q99442 399 aaKnown RBP19.55■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 SERPINB13Q9UIV8 391 aa19.55■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 GNAT2P19087 354 aa19.54■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 PLCD1P51178 756 aa19.54■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 GTF2A2P52657 109 aa19.54■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 INHBEP58166 350 aa19.54■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CCDC136Q96JN2 1154 aa19.54■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 IRF6O14896 467 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 PTPRAP18433 802 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CAP2P40123 477 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CTCFP49711 727 aaPredicted RBP19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 RRP1BQ14684 758 aaKnown RBP19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 TTC22Q5TAA0 569 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 AMOTL1Q8IY63 956 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 MS4A4AQ96JQ5 239 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 SAGE1Q9NXZ1 904 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 ATAD5Q96QE3 1844 aa19.53■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 GSG1L2A8MUP6 293 aa19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CYP2D6P10635 497 aa19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 SNAPC2Q13487 334 aa19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 GIMAP6Q6P9H5 292 aa19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 HELLSQ9NRZ9 838 aa19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 RNF186Q9NXI6 227 aa19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 ARPP21Q9UBL0 812 aaPredicted RBP19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 BAZ2AQ9UIF9 1905 aaKnown RBP19.52■□□□□ 0.72
MSH5-SAPCD1-206ENST00000491552 CCL15-CCL14A0A0B4J2E2 113 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TESPA1A2RU30 521 aaPredicted RBP19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 USP17L12C9JPN9 530 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 USP17L21D6R901 530 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TRPA1O75762 1119 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 HSPA8P11142 646 aaKnown RBP19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 GSPT1P15170 499 aaKnown RBP19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 EVX2Q03828 476 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 GABPAQ06546 454 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CCL15Q16663 113 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 IFNL1Q8IU54 200 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 FAM227BQ96M60 508 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 KCNH4Q9UQ05 1017 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ZHX2Q9Y6X8 837 aa19.51■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 A0A0D9SFI3 127 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 PATL2C9JE40 543 aaKnown RBP19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 GDF11O95390 407 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 APPP05067 770 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CETPP11597 493 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 SDSP20132 328 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 NMIQ13287 307 aaPredicted RBP19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 C12orf60Q5U649 245 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TATDN1Q6P1N9 297 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CTR9Q6PD62 1173 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CCDC129Q6ZRS4 1044 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 BRI3BPQ8WY22 251 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 EPB41L4AQ9HCS5 686 aaPredicted RBP19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 GINM1Q9NU53 330 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TSKSQ9UJT2 592 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TAOK2Q9UL54 1235 aa19.5■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 PHIPQ8WWQ0 1821 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CYP2D7A0A087X1C5 515 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms