RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 TLR7Q9NYK1 1049 aaKnown RBP16.73■□□□□ 0.27
COL6A3-211ENST00000491233 MYH1P12882 1939 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 CYP2E1P05181 493 aaPredicted RBP16.72■□□□□ 0.27
COL6A3-211ENST00000491233 BCRP11274 1271 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 OSBPP22059 807 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 ZAP70P43403 619 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 CEP85Q6P2H3 762 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 ADGRA1Q86SQ6 560 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 PANK1Q8TE04 598 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 ZNF512BQ96KM6 892 aaPredicted RBP16.72■□□□□ 0.27
COL6A3-211ENST00000491233 SRRDQ9UH36 339 aa16.72■□□□□ 0.27
COL6A3-211ENST00000491233 FMNL1O95466 1100 aaPredicted RBP16.71■□□□□ 0.27
COL6A3-211ENST00000491233 BAG3O95817 575 aa16.71■□□□□ 0.27
COL6A3-211ENST00000491233 SLC4A8Q2Y0W8 1093 aa16.71■□□□□ 0.27
COL6A3-211ENST00000491233 EAF2Q96CJ1 260 aaPredicted RBP16.71■□□□□ 0.27
COL6A3-211ENST00000491233 CCDC8Q9H0W5 538 aaPredicted RBP16.71■□□□□ 0.27
COL6A3-211ENST00000491233 PIH1D3Q9NQM4 214 aaKnown RBP16.71■□□□□ 0.27
COL6A3-211ENST00000491233 MYPNQ86TC9 1320 aa16.7■□□□□ 0.26
COL6A3-211ENST00000491233 PLCG2P16885 1265 aa16.7■□□□□ 0.26
COL6A3-211ENST00000491233 MAPKAPK5Q8IW41 473 aa16.7■□□□□ 0.26
COL6A3-211ENST00000491233 SLC45A1Q9Y2W3 748 aa16.7■□□□□ 0.26
COL6A3-211ENST00000491233 CENPFP49454 3210 aa16.7■□□□□ 0.26
COL6A3-211ENST00000491233 FLT1P17948 1338 aa16.7■□□□□ 0.26
COL6A3-211ENST00000491233 HOXD10P28358 340 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 FCGRTP55899 365 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 PPP4CP60510 307 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 RRP1BQ14684 758 aaKnown RBP16.69■□□□□ 0.26
COL6A3-211ENST00000491233 RAET1EQ8TD07 263 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 SMCR8Q8TEV9 937 aaPredicted RBP16.69■□□□□ 0.26
COL6A3-211ENST00000491233 TGFBRAP1Q8WUH2 860 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 HERC5Q9UII4 1024 aaKnown RBP16.69■□□□□ 0.26
COL6A3-211ENST00000491233 AGTPBP1Q9UPW5 1226 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 EXOC6BQ9Y2D4 811 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 NAV1Q8NEY1 1877 aa16.69■□□□□ 0.26
COL6A3-211ENST00000491233 DDX60LQ5H9U9 1706 aaKnown RBP16.68■□□□□ 0.26
COL6A3-211ENST00000491233 CAP2P40123 477 aa16.68■□□□□ 0.26
COL6A3-211ENST00000491233 PRKCZQ05513 592 aa16.68■□□□□ 0.26
COL6A3-211ENST00000491233 SPP2Q13103 211 aa16.68■□□□□ 0.26
COL6A3-211ENST00000491233 TREML2Q5T2D2 321 aa16.68■□□□□ 0.26
COL6A3-211ENST00000491233 IGSF3O75054 1194 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 IDH1O75874 414 aaKnown RBP16.67■□□□□ 0.26
COL6A3-211ENST00000491233 GRK4P32298 578 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 MTFR1Q15390 333 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 AACSQ86V21 672 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 ERC1Q8IUD2 1116 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 ZNF280CQ8ND82 737 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 TBC1D2Q9BYX2 928 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 DHX36Q9H2U1 1008 aaKnown RBP16.67■□□□□ 0.26
COL6A3-211ENST00000491233 DNAJC18Q9H819 358 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 PI4KBQ9UBF8 816 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 PNMA3Q9UL41 463 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 NDUFB9Q9Y6M9 179 aa16.67■□□□□ 0.26
COL6A3-211ENST00000491233 CYP7A1P22680 504 aa16.66■□□□□ 0.26
COL6A3-211ENST00000491233 HMGCS2P54868 508 aa16.66■□□□□ 0.26
COL6A3-211ENST00000491233 DYNLL1P63167 89 aaKnown RBP16.66■□□□□ 0.26
COL6A3-211ENST00000491233 PROCA1Q8NCQ7 364 aaPredicted RBP16.66■□□□□ 0.26
COL6A3-211ENST00000491233 GABRQQ9UN88 632 aa16.66■□□□□ 0.26
COL6A3-211ENST00000491233 DOCK3Q8IZD9 2030 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 USP17L5A8MUK1 530 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 MS4A1P11836 297 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 CRACR2BQ8N4Y2 399 aaPredicted RBP16.65■□□□□ 0.26
COL6A3-211ENST00000491233 ANKRD13CQ8N6S4 541 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 TRIM34Q9BYJ4 488 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 ANTXR1Q9H6X2 564 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 AS3MTQ9HBK9 375 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 IL1RAPL2Q9NP60 686 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 SAP30BPQ9UHR5 308 aaKnown RBP16.65■□□□□ 0.26
COL6A3-211ENST00000491233 PALD1Q9ULE6 856 aa16.65■□□□□ 0.26
COL6A3-211ENST00000491233 TNPO2O14787 897 aaKnown RBP16.64■□□□□ 0.25
COL6A3-211ENST00000491233 MAGEB6Q8N7X4 407 aa16.64■□□□□ 0.25
COL6A3-211ENST00000491233 MIGA1Q8NAN2 632 aa16.64■□□□□ 0.25
COL6A3-211ENST00000491233 SHISA4Q96DD7 197 aa16.64■□□□□ 0.25
COL6A3-211ENST00000491233 GDF11O95390 407 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 HLA-DOAP06340 250 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 ASNSP08243 561 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 FLT3LGP49771 235 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 JAG1P78504 1218 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 MTMR2Q13614 643 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 FAM110CQ1W6H9 321 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 SHROOM1Q2M3G4 852 aaPredicted RBP16.63■□□□□ 0.25
COL6A3-211ENST00000491233 HSP90AB4PQ58FF6 505 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 SH3D19Q5HYK7 790 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 METTL16Q86W50 562 aaKnown RBP16.63■□□□□ 0.25
COL6A3-211ENST00000491233 FOXP4Q8IVH2 680 aaPredicted RBP16.63■□□□□ 0.25
COL6A3-211ENST00000491233 SLAIN1Q8ND83 568 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 RHPN1Q8TCX5 695 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 BIN2Q9UBW5 565 aaPredicted RBP16.63■□□□□ 0.25
COL6A3-211ENST00000491233 COG6Q9Y2V7 657 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 BRCA2P51587 3418 aa16.63■□□□□ 0.25
COL6A3-211ENST00000491233 PLXNB2O15031 1838 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 APBB1O00213 710 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 CCL5P13501 91 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 UBXN2AP68543 259 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 MAP3K12Q12852 859 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 PABPC4Q13310 644 aaKnown RBP eCLIP16.62■□□□□ 0.25
COL6A3-211ENST00000491233 WDR18Q9BV38 432 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 ZBTB21Q9ULJ3 1066 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 DDX19BQ9UMR2 479 aa16.62■□□□□ 0.25
COL6A3-211ENST00000491233 MYH7P12883 1935 aa16.61■□□□□ 0.25
COL6A3-211ENST00000491233 ADCY3O60266 1144 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms