RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 CEP63Q96MT8 703 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 TTC14Q96N46 770 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 USP44Q9H0E7 712 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 RBSNQ9H1K0 784 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 ZFP64Q9NPA5 681 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 SCHIP1Q9P0W5 487 aaPredicted RBP6.97□□□□□ -1.29
VPS41-214ENST00000490924 TMEM63CQ9P1W3 806 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 ELP1O95163 1332 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 HEG1Q9ULI3 1381 aa6.96□□□□□ -1.29
VPS41-214ENST00000490924 CEP170BQ9Y4F5 1589 aaPredicted RBP6.96□□□□□ -1.29
VPS41-214ENST00000490924 ADARB2-AS1A8MUL3 147 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 EFSO43281 561 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 LILRB5O75023 590 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 PDCP20941 246 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 FBLN1P23142 703 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 ATP1A2P50993 1020 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 NRG1Q02297 640 aaPredicted RBP6.96□□□□□ -1.3
VPS41-214ENST00000490924 TBC1D8BQ0IIM8 1120 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 SPEM2Q0P670 501 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 FKBP5Q13451 457 aaPredicted RBP6.96□□□□□ -1.3
VPS41-214ENST00000490924 AMOTQ4VCS5 1084 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 VPS53Q5VIR6 699 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 SASS6Q6UVJ0 657 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 RGS22Q8NE09 1264 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 PI4K2BQ8TCG2 481 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 IQSEC3Q9UPP2 1182 aaPredicted RBP6.96□□□□□ -1.3
VPS41-214ENST00000490924 LIMCH1Q9UPQ0 1083 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 UTYO14607 1347 aa6.96□□□□□ -1.3
VPS41-214ENST00000490924 RAD21O60216 631 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 ZSCAN22P10073 491 aaPredicted RBP6.95□□□□□ -1.3
VPS41-214ENST00000490924 HOXC9P31274 260 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 ADH7P40394 386 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 AMPHP49418 695 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 KIAA2012Q0VF49 1180 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 PKP1Q13835 747 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 MLECQ14165 292 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 ANKRD1Q15327 319 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 THEMISQ8N1K5 641 aaPredicted RBP6.95□□□□□ -1.3
VPS41-214ENST00000490924 CHMP4CQ96CF2 233 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 LSG1Q9H089 658 aaKnown RBP6.95□□□□□ -1.3
VPS41-214ENST00000490924 ANO2Q9NQ90 1003 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 PRDM6Q9NQX0 595 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 SPTLC3Q9NUV7 552 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 JCADQ9P266 1359 aa6.95□□□□□ -1.3
VPS41-214ENST00000490924 MRC1P22897 1456 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 PNMA6EA0A0J9YXQ4 647 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 UBAP1LF5GYI3 381 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 SMARCA5O60264 1052 aaPredicted RBP6.94□□□□□ -1.3
VPS41-214ENST00000490924 PSMA5P28066 241 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 TXLNAP40222 546 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 RSPO4Q2I0M5 234 aaPredicted RBP6.94□□□□□ -1.3
VPS41-214ENST00000490924 KRT24Q2M2I5 525 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 HDGFL1Q5TGJ6 251 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 G2E3Q7L622 706 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 SLC9A9Q8IVB4 645 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS41-214ENST00000490924 NFATC2IPQ8NCF5 419 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 KCNH5Q8NCM2 988 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 PIBF1Q8WXW3 757 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 IP6K1Q92551 441 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 TNFRSF25Q93038 417 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 STRN4Q9NRL3 753 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 TPSG1Q9NRR2 321 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 ZNF358Q9NW07 568 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 HMG20BQ9P0W2 317 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 KCNH4Q9UQ05 1017 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 PCDHGA11Q9Y5H2 935 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 LRRFIP2Q9Y608 721 aaKnown RBP6.94□□□□□ -1.3
VPS41-214ENST00000490924 NFAT5O94916 1531 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 LTBP4Q8N2S1 1624 aa6.94□□□□□ -1.3
VPS41-214ENST00000490924 LMO7Q8WWI1 1683 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 ADAMTS7Q9UKP4 1686 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 CAMTA1Q9Y6Y1 1673 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 KDM3BQ7LBC6 1761 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 CHD2O14647 1828 aaKnown RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 SYCE3A1L190 88 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 STX6O43752 255 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 DYRK3O43781 588 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 ZKSCAN1P17029 563 aaPredicted RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 LTKP29376 864 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 CEBPAP49715 358 aaPredicted RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 PSMA6P60900 246 aaKnown RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 BEND3Q5T5X7 828 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 SLC4A10Q6U841 1118 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 CLASRPQ8N2M8 674 aaKnown RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 MICALL1Q8N3F8 863 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 NGDNQ8NEJ9 315 aaKnown RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 IL17REQ8NFR9 667 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 DNAAF4Q8WXU2 420 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 EVI5LQ96CN4 794 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 PNMA5Q96PV4 448 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 IGFLR1Q9H665 355 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 BRD7Q9NPI1 651 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 DBF4Q9UBU7 674 aaPredicted RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 EXOC6BQ9Y2D4 811 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 AMOTL2Q9Y2J4 779 aa6.93□□□□□ -1.3
VPS41-214ENST00000490924 MARF1Q9Y4F3 1742 aaKnown RBP6.93□□□□□ -1.3
VPS41-214ENST00000490924 SFI1A8K8P3 1242 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 GOLGA6L6A8MZA4 724 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 F6X3S4 739 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms