RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 LARGE1O95461 756 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 SYF2O95926 243 aaKnown RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 SKIP12755 728 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 SOX11P35716 441 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 PRPHP41219 470 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 CEBPAP49715 358 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 CLNS1AP54105 237 aaKnown RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 TWISTNBQ3B726 338 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 RNF19BQ6ZMZ0 732 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 TXNDC2Q86VQ3 553 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 TSPYL6Q8N831 410 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 KLHL23Q8NBE8 558 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 SMARCC1Q92922 1105 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 WDR24Q96S15 920 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 TMX4Q9H1E5 349 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 BATF3Q9NR55 127 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 HOMER3Q9NSC5 361 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 KIAA1522Q9P206 1035 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 CDC23Q9UJX2 597 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 CYP46A1Q9Y6A2 500 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 KNDC1Q76NI1 1749 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 KIAA1210Q9ULL0 1709 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 CDHR2Q9BYE9 1310 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 RAPGEF6Q8TEU7 1601 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L5A8MUK1 530 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 MEFVO15553 781 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 WDHD1O75717 1129 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 SNUPNO95149 360 aaKnown RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 HMGB1P09429 215 aaKnown RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 EZRP15311 586 aaKnown RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 MCM3P25205 808 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 KCNH2Q12809 1159 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 PPFIA1Q13136 1202 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 PDCD2Q16342 344 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 WDR93Q6P2C0 686 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 TLDC1Q6P9B6 456 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 MICALCLQ6ZW33 695 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 CDC37L1Q7L3B6 337 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 FERMT3Q86UX7 667 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 MAB21L3Q8N8X9 362 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 FAM76AQ8TAV0 307 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 DHX58Q96C10 678 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 PNKPQ96T60 521 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 LRRCC1Q9C099 1032 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 LSG1Q9H089 658 aaKnown RBP5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 CD248Q9HCU0 757 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 IRAK4Q9NWZ3 460 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 MAP10Q9P2G4 905 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 RCOR1Q9UKL0 485 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 SLC27A5Q9Y2P5 690 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 RPS6KL1Q9Y6S9 549 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 IQGAP3Q86VI3 1631 aa5.42□□□□□ -1.54
SNRNP40-206ENST00000489853 RICTORQ6R327 1708 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 PLEKHD1A6NEE1 506 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 MYO1FO00160 1098 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 PES1O00541 588 aaKnown RBP5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 MYO1BO43795 1136 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 KINO60870 393 aaKnown RBP5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 RASSF9O75901 435 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 PECAM1P16284 738 aaPredicted RBP5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 GCKP35557 465 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 RPS6KA3P51812 740 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 FAM160A1Q05DH4 1040 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 NR1H3Q13133 447 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 DRP2Q13474 957 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 SLC5A9Q2M3M2 681 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 ATL3Q6DD88 541 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 FAM173BQ6P4H8 233 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 BLOC1S3Q6QNY0 202 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 DNAJC14Q6Y2X3 702 aaPredicted RBP5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 CCDC73Q6ZRK6 1079 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 BRAPQ7Z569 592 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 CCAR1Q8IX12 1150 aaKnown RBP5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 IGSF22Q8N9C0 903 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 ENGASEQ8NFI3 743 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 BCAS4Q8TDM0 211 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 MICAL1Q8TDZ2 1067 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 SAAL1Q96ER3 474 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 PSMD1Q99460 953 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 PAGR1Q9BTK6 254 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 CAPS2Q9BXY5 557 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 ALDH8A1Q9H2A2 487 aaPredicted RBP5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 ATP6V0A4Q9HBG4 840 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 GGA2Q9UJY4 613 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 EVC2Q86UK5 1308 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 NEO1Q92859 1461 aa5.41□□□□□ -1.54
SNRNP40-206ENST00000489853 LRRIQ3A6PVS8 624 aaPredicted RBP5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L15C9J2P7 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L10C9JJH3 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L13C9JLJ4 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L12C9JPN9 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L11C9JVI0 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L21D6R901 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L18D6R9N7 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L22D6RA61 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L17D6RBQ6 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L19D6RCP7 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 USP17L20D6RJB6 530 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 IKBKBO14920 756 aa5.4□□□□□ -1.54
SNRNP40-206ENST00000489853 EIF3HO15372 352 aaKnown RBP eCLIP5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms