RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 CCDC84Q86UT8 332 aaPredicted RBP28.07■■■□□ 2.08
COL9A3-213ENST00000489045 MAPKAPK5Q8IW41 473 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 TGFBRAP1Q8WUH2 860 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 KIF1BPQ96EK5 621 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 ANTXR1Q9H6X2 564 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 FLT1P17948 1338 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 ADGRA2Q96PE1 1338 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 LACTBP83111 547 aaPredicted RBP28.06■■■□□ 2.08
COL9A3-213ENST00000489045 PDE3AQ14432 1141 aa28.06■■■□□ 2.08
COL9A3-213ENST00000489045 C17orf99Q6UX52 265 aa28.06■■■□□ 2.08
COL9A3-213ENST00000489045 CLASRPQ8N2M8 674 aaKnown RBP28.06■■■□□ 2.08
COL9A3-213ENST00000489045 ARHGAP39Q9C0H5 1083 aa28.06■■■□□ 2.08
COL9A3-213ENST00000489045 CPA4Q9UI42 421 aa28.06■■■□□ 2.08
COL9A3-213ENST00000489045 DYNLL1P63167 89 aaKnown RBP28.05■■■□□ 2.08
COL9A3-213ENST00000489045 RBBP6Q7Z6E9 1792 aaKnown RBP28.05■■■□□ 2.08
COL9A3-213ENST00000489045 DHX36Q9H2U1 1008 aaKnown RBP28.05■■■□□ 2.08
COL9A3-213ENST00000489045 HERC5Q9UII4 1024 aaKnown RBP28.05■■■□□ 2.08
COL9A3-213ENST00000489045 LOC285556D6RIA3 1793 aa28.04■■■□□ 2.08
COL9A3-213ENST00000489045 TRIM75PA6NK02 468 aa28.04■■■□□ 2.08
COL9A3-213ENST00000489045 KIF22Q14807 665 aa28.04■■■□□ 2.08
COL9A3-213ENST00000489045 GADL1Q6ZQY3 521 aa28.04■■■□□ 2.08
COL9A3-213ENST00000489045 FASTKD5Q7L8L6 764 aaKnown RBP28.04■■■□□ 2.08
COL9A3-213ENST00000489045 MAGEB6Q8N7X4 407 aa28.04■■■□□ 2.08
COL9A3-213ENST00000489045 PARK7Q99497 189 aaKnown RBP28.04■■■□□ 2.08
COL9A3-213ENST00000489045 PI4KBQ9UBF8 816 aa28.04■■■□□ 2.08
COL9A3-213ENST00000489045 RRP1BQ14684 758 aaKnown RBP28.03■■■□□ 2.08
COL9A3-213ENST00000489045 MIGA1Q8NAN2 632 aa28.03■■■□□ 2.08
COL9A3-213ENST00000489045 BCL11AQ9H165 835 aa28.03■■■□□ 2.08
COL9A3-213ENST00000489045 MGAMO43451 1857 aa28.03■■■□□ 2.08
COL9A3-213ENST00000489045 RAB11FIP3O75154 756 aa28.02■■■□□ 2.08
COL9A3-213ENST00000489045 MAP3K12Q12852 859 aa28.02■■■□□ 2.08
COL9A3-213ENST00000489045 PTCH2Q9Y6C5 1203 aa28.02■■■□□ 2.08
COL9A3-213ENST00000489045 ECM2O94769 699 aaPredicted RBP28.01■■■□□ 2.07
COL9A3-213ENST00000489045 IFIT2P09913 472 aaKnown RBP28.01■■■□□ 2.07
COL9A3-213ENST00000489045 CYP2C8P10632 490 aa28.01■■■□□ 2.07
COL9A3-213ENST00000489045 CAP2P40123 477 aa28.01■■■□□ 2.07
COL9A3-213ENST00000489045 CENPFP49454 3210 aa28.01■■■□□ 2.07
COL9A3-213ENST00000489045 PDE4DIPQ5VU43 2346 aa28.01■■■□□ 2.07
COL9A3-213ENST00000489045 ARMC5Q96C12 935 aa28■■■□□ 2.07
COL9A3-213ENST00000489045 SAP30BPQ9UHR5 308 aaKnown RBP28■■■□□ 2.07
COL9A3-213ENST00000489045 PALD1Q9ULE6 856 aa28■■■□□ 2.07
COL9A3-213ENST00000489045 CERS3Q8IU89 383 aa27.99■■■□□ 2.07
COL9A3-213ENST00000489045 DNAJC18Q9H819 358 aa27.99■■■□□ 2.07
COL9A3-213ENST00000489045 NAV1Q8NEY1 1877 aa27.99■■■□□ 2.07
COL9A3-213ENST00000489045 DDX60LQ5H9U9 1706 aaKnown RBP27.98■■■□□ 2.07
COL9A3-213ENST00000489045 CTGFP29279 349 aa27.98■■■□□ 2.07
COL9A3-213ENST00000489045 TTF1Q15361 905 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-213ENST00000489045 TMED8Q6PL24 325 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-213ENST00000489045 CRACR2BQ8N4Y2 399 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-213ENST00000489045 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.98■■■□□ 2.07
COL9A3-213ENST00000489045 TRIM34Q9BYJ4 488 aa27.98■■■□□ 2.07
COL9A3-213ENST00000489045 SLC45A1Q9Y2W3 748 aa27.98■■■□□ 2.07
COL9A3-213ENST00000489045 GNRH1P01148 92 aa27.97■■■□□ 2.07
COL9A3-213ENST00000489045 HLA-DOAP06340 250 aa27.97■■■□□ 2.07
COL9A3-213ENST00000489045 SLC4A8Q2Y0W8 1093 aa27.97■■■□□ 2.07
COL9A3-213ENST00000489045 METTL16Q86W50 562 aaKnown RBP27.97■■■□□ 2.07
COL9A3-213ENST00000489045 ZNF280CQ8ND82 737 aa27.97■■■□□ 2.07
COL9A3-213ENST00000489045 DNAJC2Q99543 621 aaKnown RBP27.97■■■□□ 2.07
COL9A3-213ENST00000489045 KIAA0100Q14667 2235 aaKnown RBP27.96■■■□□ 2.07
COL9A3-213ENST00000489045 USP17L5A8MUK1 530 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 BCRP11274 1271 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 PSMC4P43686 418 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 USP5P45974 858 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 SPP2Q13103 211 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 SLC9C1Q4G0N8 1177 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 FOXP4Q8IVH2 680 aaPredicted RBP27.96■■■□□ 2.07
COL9A3-213ENST00000489045 TRIM47Q96LD4 638 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 TBC1D2Q9BYX2 928 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 AGTPBP1Q9UPW5 1226 aa27.96■■■□□ 2.07
COL9A3-213ENST00000489045 MYH7P12883 1935 aa27.95■■■□□ 2.06
COL9A3-213ENST00000489045 GOLIM4O00461 696 aa27.95■■■□□ 2.06
COL9A3-213ENST00000489045 TREML2Q5T2D2 321 aa27.95■■■□□ 2.06
COL9A3-213ENST00000489045 POTEFA5A3E0 1075 aa27.94■■■□□ 2.06
COL9A3-213ENST00000489045 PDE6AP16499 860 aa27.94■■■□□ 2.06
COL9A3-213ENST00000489045 PROCA1Q8NCQ7 364 aaPredicted RBP27.94■■■□□ 2.06
COL9A3-213ENST00000489045 ZNF333Q96JL9 665 aa27.94■■■□□ 2.06
COL9A3-213ENST00000489045 FMNL1O95466 1100 aaPredicted RBP27.93■■■□□ 2.06
COL9A3-213ENST00000489045 HMGCS2P54868 508 aa27.93■■■□□ 2.06
COL9A3-213ENST00000489045 PRMT2P55345 433 aa27.93■■■□□ 2.06
COL9A3-213ENST00000489045 JAG1P78504 1218 aa27.93■■■□□ 2.06
COL9A3-213ENST00000489045 SLC9C2Q5TAH2 1124 aa27.93■■■□□ 2.06
COL9A3-213ENST00000489045 SMCR8Q8TEV9 937 aaPredicted RBP27.93■■■□□ 2.06
COL9A3-213ENST00000489045 EDC3Q96F86 508 aaKnown RBP27.93■■■□□ 2.06
COL9A3-213ENST00000489045 RIOK1Q9BRS2 568 aaKnown RBP27.93■■■□□ 2.06
COL9A3-213ENST00000489045 AS3MTQ9HBK9 375 aa27.93■■■□□ 2.06
COL9A3-213ENST00000489045 MAGEB6P1A0A0J9YX57 407 aa27.92■■■□□ 2.06
COL9A3-213ENST00000489045 GDF11O95390 407 aa27.92■■■□□ 2.06
COL9A3-213ENST00000489045 ASNSP08243 561 aa27.92■■■□□ 2.06
COL9A3-213ENST00000489045 OSBPP22059 807 aa27.92■■■□□ 2.06
COL9A3-213ENST00000489045 SHROOM1Q2M3G4 852 aaPredicted RBP27.92■■■□□ 2.06
COL9A3-213ENST00000489045 NBPF11Q86T75 865 aa27.92■■■□□ 2.06
COL9A3-213ENST00000489045 LRRCC1Q9C099 1032 aa27.92■■■□□ 2.06
COL9A3-213ENST00000489045 SRRDQ9UH36 339 aa27.92■■■□□ 2.06
COL9A3-213ENST00000489045 SH3TC2Q8TF17 1288 aa27.91■■■□□ 2.06
COL9A3-213ENST00000489045 BOLA2Q9H3K6 86 aa27.91■■■□□ 2.06
COL9A3-213ENST00000489045 ZNF532Q9HCE3 1301 aa27.91■■■□□ 2.06
COL9A3-213ENST00000489045 ATP5JP18859 108 aa27.9■■■□□ 2.06
COL9A3-213ENST00000489045 FCGRTP55899 365 aa27.9■■■□□ 2.06
COL9A3-213ENST00000489045 WDR18Q9BV38 432 aa27.9■■■□□ 2.06
COL9A3-213ENST00000489045 PAG1Q9NWQ8 432 aa27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms