RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 BRCA2P51587 3418 aa27.61■■■□□ 2.01
PTPN4-211ENST00000488279 FMNL1O95466 1100 aaPredicted RBP27.61■■■□□ 2.01
PTPN4-211ENST00000488279 ADGRA1Q86SQ6 560 aa27.61■■■□□ 2.01
PTPN4-211ENST00000488279 TGFBRAP1Q8WUH2 860 aa27.61■■■□□ 2.01
PTPN4-211ENST00000488279 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.61■■■□□ 2.01
PTPN4-211ENST00000488279 AACSQ86V21 672 aa27.6■■■□□ 2.01
PTPN4-211ENST00000488279 TRIM47Q96LD4 638 aa27.6■■■□□ 2.01
PTPN4-211ENST00000488279 CAP2P40123 477 aa27.59■■■□□ 2.01
PTPN4-211ENST00000488279 CCDC84Q86UT8 332 aaPredicted RBP27.59■■■□□ 2.01
PTPN4-211ENST00000488279 RPAP2Q8IXW5 612 aaPredicted RBP27.59■■■□□ 2.01
PTPN4-211ENST00000488279 TBC1D2Q9BYX2 928 aa27.59■■■□□ 2.01
PTPN4-211ENST00000488279 DDX19BQ9UMR2 479 aa27.59■■■□□ 2.01
PTPN4-211ENST00000488279 PDE4DIPQ5VU43 2346 aa27.58■■■□□ 2.01
PTPN4-211ENST00000488279 IDH1O75874 414 aaKnown RBP27.58■■■□□ 2.01
PTPN4-211ENST00000488279 BCRP11274 1271 aa27.58■■■□□ 2.01
PTPN4-211ENST00000488279 CYP7A1P22680 504 aa27.58■■■□□ 2.01
PTPN4-211ENST00000488279 CTGFP29279 349 aa27.58■■■□□ 2.01
PTPN4-211ENST00000488279 MAPKAPK5Q8IW41 473 aa27.58■■■□□ 2.01
PTPN4-211ENST00000488279 SRRDQ9UH36 339 aa27.58■■■□□ 2.01
PTPN4-211ENST00000488279 EN2P19622 333 aaPredicted RBP27.57■■■□□ 2
PTPN4-211ENST00000488279 SPP2Q13103 211 aa27.57■■■□□ 2
PTPN4-211ENST00000488279 SLC4A8Q2Y0W8 1093 aa27.57■■■□□ 2
PTPN4-211ENST00000488279 FOXP4Q8IVH2 680 aaPredicted RBP27.57■■■□□ 2
PTPN4-211ENST00000488279 ZNF280CQ8ND82 737 aa27.57■■■□□ 2
PTPN4-211ENST00000488279 SH3TC2Q8TF17 1288 aa27.57■■■□□ 2
PTPN4-211ENST00000488279 COG6Q9Y2V7 657 aa27.57■■■□□ 2
PTPN4-211ENST00000488279 HMMRO75330 724 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 OSBPP22059 807 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 PRPF38BQ5VTL8 546 aaKnown RBP27.56■■■□□ 2
PTPN4-211ENST00000488279 RHPN1Q8TCX5 695 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 SMCR8Q8TEV9 937 aaPredicted RBP27.56■■■□□ 2
PTPN4-211ENST00000488279 CHMP4BQ9H444 224 aaKnown RBP27.56■■■□□ 2
PTPN4-211ENST00000488279 IL1RAPL2Q9NP60 686 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 ZBTB40Q9NUA8 1239 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 RCAN3Q9UKA8 241 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 AGTPBP1Q9UPW5 1226 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 FLT1P17948 1338 aa27.56■■■□□ 2
PTPN4-211ENST00000488279 USP17L5A8MUK1 530 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 FCGRTP55899 365 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 MAP3K12Q12852 859 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 RRP1BQ14684 758 aaKnown RBP27.55■■■□□ 2
PTPN4-211ENST00000488279 CERS3Q8IU89 383 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 RAET1EQ8TD07 263 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 TRIM34Q9BYJ4 488 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 PALD1Q9ULE6 856 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 NDUFB9Q9Y6M9 179 aa27.55■■■□□ 2
PTPN4-211ENST00000488279 MYCP01106 439 aaPredicted RBP27.54■■■□□ 2
PTPN4-211ENST00000488279 DYNLL1P63167 89 aaKnown RBP27.54■■■□□ 2
PTPN4-211ENST00000488279 TMED8Q6PL24 325 aaPredicted RBP27.54■■■□□ 2
PTPN4-211ENST00000488279 CLASRPQ8N2M8 674 aaKnown RBP27.54■■■□□ 2
PTPN4-211ENST00000488279 CRACR2BQ8N4Y2 399 aaPredicted RBP27.54■■■□□ 2
PTPN4-211ENST00000488279 MAGEB6Q8N7X4 407 aa27.54■■■□□ 2
PTPN4-211ENST00000488279 PROCA1Q8NCQ7 364 aaPredicted RBP27.54■■■□□ 2
PTPN4-211ENST00000488279 KIF1BPQ96EK5 621 aa27.54■■■□□ 2
PTPN4-211ENST00000488279 METTL16Q86W50 562 aaKnown RBP27.53■■■□□ 2
PTPN4-211ENST00000488279 ANTXR1Q9H6X2 564 aa27.53■■■□□ 2
PTPN4-211ENST00000488279 AS3MTQ9HBK9 375 aa27.53■■■□□ 2
PTPN4-211ENST00000488279 PNMA3Q9UL41 463 aa27.53■■■□□ 2
PTPN4-211ENST00000488279 MYPNQ86TC9 1320 aa27.52■■■□□ 2
PTPN4-211ENST00000488279 APBB1O00213 710 aa27.52■■■□□ 2
PTPN4-211ENST00000488279 HLA-DOAP06340 250 aa27.52■■■□□ 2
PTPN4-211ENST00000488279 TREML2Q5T2D2 321 aa27.52■■■□□ 2
PTPN4-211ENST00000488279 MIGA1Q8NAN2 632 aa27.52■■■□□ 2
PTPN4-211ENST00000488279 SAP30BPQ9UHR5 308 aaKnown RBP27.52■■■□□ 2
PTPN4-211ENST00000488279 DOCK1Q14185 1865 aa27.52■■■□□ 2
PTPN4-211ENST00000488279 ASNSP08243 561 aa27.51■■□□□ 1.99
PTPN4-211ENST00000488279 PABPC4Q13310 644 aaKnown RBP eCLIP27.51■■□□□ 1.99
PTPN4-211ENST00000488279 SIRT2Q8IXJ6 389 aa27.51■■□□□ 1.99
PTPN4-211ENST00000488279 KIAA0100Q14667 2235 aaKnown RBP27.51■■□□□ 1.99
PTPN4-211ENST00000488279 GRK4P32298 578 aa27.5■■□□□ 1.99
PTPN4-211ENST00000488279 USP5P45974 858 aa27.5■■□□□ 1.99
PTPN4-211ENST00000488279 HMGCS2P54868 508 aa27.5■■□□□ 1.99
PTPN4-211ENST00000488279 TTF1Q15361 905 aaPredicted RBP27.5■■□□□ 1.99
PTPN4-211ENST00000488279 WDR18Q9BV38 432 aa27.5■■□□□ 1.99
PTPN4-211ENST00000488279 RAB11FIP3O75154 756 aa27.49■■□□□ 1.99
PTPN4-211ENST00000488279 IFIT2P09913 472 aaKnown RBP27.49■■□□□ 1.99
PTPN4-211ENST00000488279 PRKCZQ05513 592 aa27.49■■□□□ 1.99
PTPN4-211ENST00000488279 DNAJC18Q9H819 358 aa27.49■■□□□ 1.99
PTPN4-211ENST00000488279 GINM1Q9NU53 330 aa27.49■■□□□ 1.99
PTPN4-211ENST00000488279 MAST2Q6P0Q8 1798 aa27.49■■□□□ 1.99
PTPN4-211ENST00000488279 ZSWIM8A7E2V4 1837 aa27.48■■□□□ 1.99
PTPN4-211ENST00000488279 SH3D19Q5HYK7 790 aa27.48■■□□□ 1.99
PTPN4-211ENST00000488279 ANKRD13CQ8N6S4 541 aa27.48■■□□□ 1.99
PTPN4-211ENST00000488279 BCL11AQ9H165 835 aa27.47■■□□□ 1.99
PTPN4-211ENST00000488279 BIN2Q9UBW5 565 aaPredicted RBP27.47■■□□□ 1.99
PTPN4-211ENST00000488279 PHIPQ8WWQ0 1821 aa27.46■■□□□ 1.99
PTPN4-211ENST00000488279 GCLCP48506 637 aaPredicted RBP27.46■■□□□ 1.99
PTPN4-211ENST00000488279 BACE1P56817 501 aa27.46■■□□□ 1.99
PTPN4-211ENST00000488279 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.46■■□□□ 1.99
PTPN4-211ENST00000488279 TNPO2O14787 897 aaKnown RBP27.45■■□□□ 1.98
PTPN4-211ENST00000488279 GDF11O95390 407 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 JAG1P78504 1218 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 MTMR2Q13614 643 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 PDE3AQ14432 1141 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 MTFR1Q15390 333 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 FAM110CQ1W6H9 321 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 TMOD4Q9NZQ9 345 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 GABRQQ9UN88 632 aa27.45■■□□□ 1.98
PTPN4-211ENST00000488279 SLC9C2Q5TAH2 1124 aa27.44■■□□□ 1.98
PTPN4-211ENST00000488279 SLAIN1Q8ND83 568 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms