RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ATP6V1AP38606 617 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 IGHMBP2P38935 993 aaKnown RBP20.65■□□□□ 0.9
VIM-206ENST00000487938 NR5A1Q13285 461 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 TRIM22Q8IYM9 498 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 WASF1Q92558 559 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 ERICH2A1L162 156 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 BMP6P22004 513 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 PDE4BQ07343 736 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 GOLGA8FQ08AF8 430 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 GOLGA8DPQ0D2H9 430 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 SART3Q15020 963 aaKnown RBP20.65■□□□□ 0.9
VIM-206ENST00000487938 CFAP100Q494V2 611 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 SDR42E1Q8WUS8 393 aa20.65■□□□□ 0.9
VIM-206ENST00000487938 WTIPA6NIX2 430 aaPredicted RBP20.64■□□□□ 0.89
VIM-206ENST00000487938 CRKLP46109 303 aaKnown RBP20.64■□□□□ 0.89
VIM-206ENST00000487938 CHRNDQ07001 517 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 CCDC152Q4G0S7 254 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 ADGRA1Q86SQ6 560 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 CRACR2BQ8N4Y2 399 aaPredicted RBP20.64■□□□□ 0.89
VIM-206ENST00000487938 CCDC87Q9NVE4 849 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 ABCF2Q9UG63 623 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 PCDHB6Q9Y5E3 794 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 TMEM232C9JQI7 657 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 GNAT2P19087 354 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 CYP7A1P22680 504 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 MDM2Q00987 491 aaPredicted RBP20.64■□□□□ 0.89
VIM-206ENST00000487938 OXER1Q8TDS5 423 aa20.64■□□□□ 0.89
VIM-206ENST00000487938 NIP7Q9Y221 180 aaKnown RBP eCLIP20.64■□□□□ 0.89
VIM-206ENST00000487938 ROBO1Q9Y6N7 1651 aa20.63■□□□□ 0.89
VIM-206ENST00000487938 SYT10Q6XYQ8 523 aa20.63■□□□□ 0.89
VIM-206ENST00000487938 FANCBQ8NB91 859 aa20.63■□□□□ 0.89
VIM-206ENST00000487938 PNPLA7Q6ZV29 1317 aa20.63■□□□□ 0.89
VIM-206ENST00000487938 CHD4Q14839 1912 aa20.63■□□□□ 0.89
VIM-206ENST00000487938 POLR2DO15514 142 aaKnown RBP20.62■□□□□ 0.89
VIM-206ENST00000487938 PPARAQ07869 468 aa20.62■□□□□ 0.89
VIM-206ENST00000487938 ZNF654Q8IZM8 581 aa20.62■□□□□ 0.89
VIM-206ENST00000487938 SERTAD1Q9UHV2 236 aa20.62■□□□□ 0.89
VIM-206ENST00000487938 FBXO2Q9UK22 296 aaPredicted RBP20.62■□□□□ 0.89
VIM-206ENST00000487938 CAMTA2O94983 1202 aa20.62■□□□□ 0.89
VIM-206ENST00000487938 GRAMD1CQ8IYS0 662 aa20.62■□□□□ 0.89
VIM-206ENST00000487938 PDILTQ8N807 584 aa20.62■□□□□ 0.89
VIM-206ENST00000487938 CGNQ9P2M7 1197 aaKnown RBP20.62■□□□□ 0.89
VIM-206ENST00000487938 LRP5O75197 1615 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 COL16A1Q07092 1604 aaPredicted RBP20.61■□□□□ 0.89
VIM-206ENST00000487938 AHDC1Q5TGY3 1603 aaPredicted RBP20.61■□□□□ 0.89
VIM-206ENST00000487938 NPHP1O15259 732 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 DEXIO95424 95 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 PRR29P0C7W0 189 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 FOXP1Q9H334 677 aaPredicted RBP20.61■□□□□ 0.89
VIM-206ENST00000487938 CABP5Q9NP86 173 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 PLCH1Q4KWH8 1693 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 ARAP2Q8WZ64 1704 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 PSDA5PKW4 1024 aaPredicted RBP20.61■□□□□ 0.89
VIM-206ENST00000487938 CBFA2T2O43439 604 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 NRDCO43847 1150 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 PTPREP23469 700 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 UBAC1Q9BSL1 405 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 RAI14Q9P0K7 980 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 MAN1B1Q9UKM7 699 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 DOCK2Q92608 1830 aa20.61■□□□□ 0.89
VIM-206ENST00000487938 COL22A1Q8NFW1 1626 aaPredicted RBP20.61■□□□□ 0.89
VIM-206ENST00000487938 KIF2AO00139 706 aaPredicted RBP20.6■□□□□ 0.89
VIM-206ENST00000487938 ZSCAN20P17040 1043 aaPredicted RBP20.6■□□□□ 0.89
VIM-206ENST00000487938 GYG1P46976 350 aa20.6■□□□□ 0.89
VIM-206ENST00000487938 RILPL1Q5EBL4 403 aa20.6■□□□□ 0.89
VIM-206ENST00000487938 hCG_1642624A0A1W2PR95 340 aa20.6■□□□□ 0.89
VIM-206ENST00000487938 POSTNQ15063 836 aa20.6■□□□□ 0.89
VIM-206ENST00000487938 ZNF827Q17R98 1081 aa20.6■□□□□ 0.89
VIM-206ENST00000487938 USP49Q70CQ1 688 aa20.6■□□□□ 0.89
VIM-206ENST00000487938 TMTC2Q8N394 836 aa20.6■□□□□ 0.89
VIM-206ENST00000487938 RNF41Q9H4P4 317 aaPredicted RBP20.6■□□□□ 0.89
VIM-206ENST00000487938 CCDC196A0A1B0GTZ2 297 aa20.59■□□□□ 0.89
VIM-206ENST00000487938 SLU7O95391 586 aaKnown RBP20.59■□□□□ 0.89
VIM-206ENST00000487938 NTSR2O95665 410 aa20.59■□□□□ 0.89
VIM-206ENST00000487938 ITPK1Q13572 414 aa20.59■□□□□ 0.89
VIM-206ENST00000487938 HOMER1Q86YM7 354 aa20.59■□□□□ 0.89
VIM-206ENST00000487938 VSTM4Q8IW00 320 aa20.59■□□□□ 0.89
VIM-206ENST00000487938 CYP2D7A0A087X1C5 515 aa20.58■□□□□ 0.89
VIM-206ENST00000487938 MAGEB6P1A0A0J9YX57 407 aa20.58■□□□□ 0.89
VIM-206ENST00000487938 TOP1P11387 765 aaKnown RBP20.58■□□□□ 0.89
VIM-206ENST00000487938 ELF2Q15723 593 aa20.58■□□□□ 0.89
VIM-206ENST00000487938 PARP10Q53GL7 1025 aa20.58■□□□□ 0.89
VIM-206ENST00000487938 ERO1AQ96HE7 468 aa20.58■□□□□ 0.89
VIM-206ENST00000487938 FEZ1Q99689 392 aa20.58■□□□□ 0.89
VIM-206ENST00000487938 CDCA7Q9BWT1 371 aaPredicted RBP20.58■□□□□ 0.89
VIM-206ENST00000487938 NID2Q14112 1375 aa20.58■□□□□ 0.89
VIM-206ENST00000487938 FAM205CA6NFA0 338 aa20.58■□□□□ 0.88
VIM-206ENST00000487938 TNKSO95271 1327 aa20.58■□□□□ 0.88
VIM-206ENST00000487938 SHISA4Q96DD7 197 aa20.58■□□□□ 0.88
VIM-206ENST00000487938 INTS13Q9NVM9 706 aa20.58■□□□□ 0.88
VIM-206ENST00000487938 HOOK1Q9UJC3 728 aaKnown RBP20.58■□□□□ 0.88
VIM-206ENST00000487938 LOC102724428A0A0B4J2F2 783 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 SIK1P57059 783 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 DYNLL1P63167 89 aaKnown RBP20.57■□□□□ 0.88
VIM-206ENST00000487938 FMR1Q06787 632 aaKnown RBP eCLIP20.57■□□□□ 0.88
VIM-206ENST00000487938 DHX8Q14562 1220 aaKnown RBP20.57■□□□□ 0.88
VIM-206ENST00000487938 TRMT44Q8IYL2 757 aaKnown RBP20.57■□□□□ 0.88
VIM-206ENST00000487938 CSRNP2Q9H175 543 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 VPS54Q9P1Q0 977 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 PRDM4Q9UKN5 801 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms