RNA–Protein interactions for RNA: ENST00000487062.1

SF3A3-206, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 775 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-206ENST00000487062 RRP12Q5JTH9 1297 aaKnown RBP8.27□□□□□ -1.09
SF3A3-206ENST00000487062 LARP1BQ659C4 914 aaKnown RBP8.27□□□□□ -1.09
SF3A3-206ENST00000487062 CTR9Q6PD62 1173 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 CPLX2Q6PUV4 134 aaKnown RBP8.27□□□□□ -1.09
SF3A3-206ENST00000487062 SYNE3Q6ZMZ3 975 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 NFXL1Q6ZNB6 911 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 CYB5R4Q7L1T6 521 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 ILDR1Q86SU0 546 aaPredicted RBP8.27□□□□□ -1.09
SF3A3-206ENST00000487062 ZNF579Q8NAF0 562 aaKnown RBP8.27□□□□□ -1.09
SF3A3-206ENST00000487062 FAM184AQ8NB25 1140 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 C7orf43Q8WVR3 580 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 VPS33BQ9H267 617 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 GAKO14976 1311 aa8.27□□□□□ -1.09
SF3A3-206ENST00000487062 ZNF646O15015 1829 aaPredicted RBP8.26□□□□□ -1.09
SF3A3-206ENST00000487062 USP17L3A6NCW0 530 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 USP17L4A6NCW7 530 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 GOLGA8BA8MQT2 603 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 CPLX1O14810 134 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 PPIP5K2O43314 1243 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 C21orf2O43822 256 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 ORC4O43929 436 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 ECE2O60344 883 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 ZSCAN22P10073 491 aaPredicted RBP8.26□□□□□ -1.09
SF3A3-206ENST00000487062 DPEP1P16444 411 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 ST3GAL1Q11201 340 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 SCRN1Q12765 414 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 WTAPQ15007 396 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 GRIK5Q16478 980 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 SKOR2Q2VWA4 1001 aaPredicted RBP8.26□□□□□ -1.09
SF3A3-206ENST00000487062 STRIP1Q5VSL9 837 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 USP17L1Q7RTZ2 530 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 SGMS1Q86VZ5 419 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 IQCA1Q86XH1 822 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 TEX11Q8IYF3 940 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 IGDCC4Q8TDY8 1250 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 SH3RF3Q8TEJ3 882 aaPredicted RBP8.26□□□□□ -1.09
SF3A3-206ENST00000487062 PSMD1Q99460 953 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 UBAC1Q9BSL1 405 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 DBNDD1Q9H9R9 158 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 ZNF287Q9HBT7 754 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 GPBP1L1Q9HC44 474 aaPredicted RBP8.26□□□□□ -1.09
SF3A3-206ENST00000487062 MCM9Q9NXL9 1143 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 PIM2Q9P1W9 311 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 ZSWIM5Q9P217 1185 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 TTF2Q9UNY4 1162 aaKnown RBP8.26□□□□□ -1.09
SF3A3-206ENST00000487062 ZDHHC9Q9Y397 364 aa8.26□□□□□ -1.09
SF3A3-206ENST00000487062 BRCA1P38398 1863 aaKnown RBP8.26□□□□□ -1.09
SF3A3-206ENST00000487062 MYH8P13535 1937 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 SCN9AQ15858 1988 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 VPS37CA5D8V6 355 aaPredicted RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 ZBTB43O43298 467 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 RANBP6O60518 1105 aaKnown RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 CDKL5O76039 1030 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 POLR3DP05423 398 aaPredicted RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 FGRP09769 529 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 KCNA3P22001 575 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 METAP2P50579 478 aaKnown RBP eCLIP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 CCT2P78371 535 aaKnown RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 HDLBPQ00341 1268 aaKnown RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 PKP1Q13835 747 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 R3HDM1Q15032 1099 aaKnown RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 AOC3Q16853 763 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 CCDC178Q5BJE1 867 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 C12orf60Q5U649 245 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 HHIPL2Q6UWX4 724 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 STK11IPQ8N1F8 1099 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 NSUN7Q8NE18 718 aaKnown RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 SMARCC2Q8TAQ2 1214 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 TGFBRAP1Q8WUH2 860 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 UPF1Q92900 1129 aaKnown RBP eCLIP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 TEKT1Q969V4 418 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 MRIQ9BWK5 157 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 LY9Q9HBG7 655 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 PLSCR2Q9NRY7 297 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 DAGLAQ9Y4D2 1042 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 SNED1Q8TER0 1413 aa8.25□□□□□ -1.09
SF3A3-206ENST00000487062 DDX60LQ5H9U9 1706 aaKnown RBP8.25□□□□□ -1.09
SF3A3-206ENST00000487062 ROBO3Q96MS0 1386 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 FER1L6Q2WGJ9 1857 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 CYP2D7A0A087X1C5 515 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 PTPDC1A2A3K4 754 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 GOLGA8AA7E2F4 631 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 F8W031 263 aaPredicted RBP8.24□□□□□ -1.09
SF3A3-206ENST00000487062 H3BQV1 296 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 F13A1P00488 732 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 USP17L8P0C7I0 530 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 RCAN1P53805 252 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 CAMK2BQ13554 666 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 PPP2R5BQ15173 497 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 CSPP1Q1MSJ5 1256 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 DALRD3Q5D0E6 543 aaKnown RBP8.24□□□□□ -1.09
SF3A3-206ENST00000487062 DACT2Q5SW24 774 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 IFFO2Q5TF58 517 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 FOXD4L5Q5VV16 416 aaPredicted RBP8.24□□□□□ -1.09
SF3A3-206ENST00000487062 MCTP1Q6DN14 999 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 APOA5Q6Q788 366 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 CERS5Q8N5B7 392 aa8.24□□□□□ -1.09
SF3A3-206ENST00000487062 FOXD4L4Q8WXT5 416 aaPredicted RBP8.24□□□□□ -1.09
SF3A3-206ENST00000487062 NCOA5Q9HCD5 579 aaKnown RBP8.24□□□□□ -1.09
SF3A3-206ENST00000487062 INCENPQ9NQS7 918 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms