RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TLR7Q9NYK1 1049 aaKnown RBP20.58■□□□□ 0.89
VIM-205ENST00000485947 STAP2Q9UGK3 403 aa20.58■□□□□ 0.89
VIM-205ENST00000485947 HERC5Q9UII4 1024 aaKnown RBP20.58■□□□□ 0.89
VIM-205ENST00000485947 IFIT2P09913 472 aaKnown RBP20.57■□□□□ 0.88
VIM-205ENST00000485947 PDE1AP54750 535 aa20.57■□□□□ 0.88
VIM-205ENST00000485947 MAP3K12Q12852 859 aa20.57■□□□□ 0.88
VIM-205ENST00000485947 FBXO46Q6PJ61 603 aaPredicted RBP20.57■□□□□ 0.88
VIM-205ENST00000485947 TBC1D2Q9BYX2 928 aa20.57■□□□□ 0.88
VIM-205ENST00000485947 TTC41PQ6P2S7 1318 aa20.56■□□□□ 0.88
VIM-205ENST00000485947 SP3Q02447 781 aa20.56■□□□□ 0.88
VIM-205ENST00000485947 TAF1CQ15572 869 aaPredicted RBP20.56■□□□□ 0.88
VIM-205ENST00000485947 BMP2KLQ5H9B9 411 aa20.56■□□□□ 0.88
VIM-205ENST00000485947 ANKRD23Q86SG2 305 aa20.56■□□□□ 0.88
VIM-205ENST00000485947 OTUD7AQ8TE49 926 aaPredicted RBP20.56■□□□□ 0.88
VIM-205ENST00000485947 GPATCH3Q96I76 525 aa20.56■□□□□ 0.88
VIM-205ENST00000485947 PIH1D3Q9NQM4 214 aaKnown RBP20.56■□□□□ 0.88
VIM-205ENST00000485947 PI4KBQ9UBF8 816 aa20.56■□□□□ 0.88
VIM-205ENST00000485947 AK9Q5TCS8 1911 aa20.55■□□□□ 0.88
VIM-205ENST00000485947 FAM43AQ8N2R8 423 aa20.55■□□□□ 0.88
VIM-205ENST00000485947 AATFQ9NY61 560 aaKnown RBP eCLIP20.55■□□□□ 0.88
VIM-205ENST00000485947 MAST2Q6P0Q8 1798 aa20.54■□□□□ 0.88
VIM-205ENST00000485947 BTBD19C9JJ37 291 aa20.54■□□□□ 0.88
VIM-205ENST00000485947 TLR2O60603 784 aa20.54■□□□□ 0.88
VIM-205ENST00000485947 IDH1O75874 414 aaKnown RBP20.54■□□□□ 0.88
VIM-205ENST00000485947 PTPRAP18433 802 aa20.54■□□□□ 0.88
VIM-205ENST00000485947 TTC22Q5TAA0 569 aa20.54■□□□□ 0.88
VIM-205ENST00000485947 FASTKD5Q7L8L6 764 aaKnown RBP20.54■□□□□ 0.88
VIM-205ENST00000485947 FOXP4Q8IVH2 680 aaPredicted RBP20.54■□□□□ 0.88
VIM-205ENST00000485947 SH3RF3Q8TEJ3 882 aaPredicted RBP20.54■□□□□ 0.88
VIM-205ENST00000485947 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.54■□□□□ 0.88
VIM-205ENST00000485947 DOCK2Q92608 1830 aa20.53■□□□□ 0.88
VIM-205ENST00000485947 ERC2O15083 957 aa20.53■□□□□ 0.88
VIM-205ENST00000485947 CYP7A1P22680 504 aa20.53■□□□□ 0.88
VIM-205ENST00000485947 BCL11AQ9H165 835 aa20.53■□□□□ 0.88
VIM-205ENST00000485947 GINM1Q9NU53 330 aa20.53■□□□□ 0.88
VIM-205ENST00000485947 GNRH1P01148 92 aa20.52■□□□□ 0.88
VIM-205ENST00000485947 METTL16Q86W50 562 aaKnown RBP20.52■□□□□ 0.88
VIM-205ENST00000485947 ECHDC1Q9NTX5 307 aa20.52■□□□□ 0.88
VIM-205ENST00000485947 HPS5Q9UPZ3 1129 aa20.52■□□□□ 0.88
VIM-205ENST00000485947 SLC45A1Q9Y2W3 748 aa20.52■□□□□ 0.88
VIM-205ENST00000485947 AFG3L2Q9Y4W6 797 aa20.52■□□□□ 0.88
VIM-205ENST00000485947 ZHX2Q9Y6X8 837 aa20.52■□□□□ 0.88
VIM-205ENST00000485947 OTOP1Q7RTM1 612 aa20.51■□□□□ 0.87
VIM-205ENST00000485947 ADGRA1Q86SQ6 560 aa20.51■□□□□ 0.87
VIM-205ENST00000485947 TGFBRAP1Q8WUH2 860 aa20.51■□□□□ 0.87
VIM-205ENST00000485947 FLT1P17948 1338 aa20.51■□□□□ 0.87
VIM-205ENST00000485947 A0A0G2JLL6 359 aaPredicted RBP20.5■□□□□ 0.87
VIM-205ENST00000485947 GLRX3O76003 335 aaKnown RBP20.5■□□□□ 0.87
VIM-205ENST00000485947 ATP5JP18859 108 aa20.5■□□□□ 0.87
VIM-205ENST00000485947 PRRT2Q7Z6L0 340 aaPredicted RBP20.5■□□□□ 0.87
VIM-205ENST00000485947 MAGEB6Q8N7X4 407 aa20.5■□□□□ 0.87
VIM-205ENST00000485947 EFCC1Q9HA90 598 aa20.5■□□□□ 0.87
VIM-205ENST00000485947 TRIM17Q9Y577 477 aa20.5■□□□□ 0.87
VIM-205ENST00000485947 PDHXO00330 501 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 HLA-DOAP06340 250 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 CAP2P40123 477 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 MOGSQ13724 837 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 KIF22Q14807 665 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 PI4K2BQ8TCG2 481 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 PARK7Q99497 189 aaKnown RBP20.49■□□□□ 0.87
VIM-205ENST00000485947 ANTXR1Q9H6X2 564 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 TAOK2Q9UL54 1235 aa20.49■□□□□ 0.87
VIM-205ENST00000485947 MKI67P46013 3256 aaKnown RBP20.49■□□□□ 0.87
VIM-205ENST00000485947 GSPT1P15170 499 aaKnown RBP20.48■□□□□ 0.87
VIM-205ENST00000485947 CD99L2Q8TCZ2 262 aa20.48■□□□□ 0.87
VIM-205ENST00000485947 PTPN22Q9Y2R2 807 aa20.48■□□□□ 0.87
VIM-205ENST00000485947 PRMT2P55345 433 aa20.47■□□□□ 0.87
VIM-205ENST00000485947 C17orf99Q6UX52 265 aa20.47■□□□□ 0.87
VIM-205ENST00000485947 MAPKAPK5Q8IW41 473 aa20.47■□□□□ 0.87
VIM-205ENST00000485947 TRIM34Q9BYJ4 488 aa20.47■□□□□ 0.87
VIM-205ENST00000485947 AS3MTQ9HBK9 375 aa20.47■□□□□ 0.87
VIM-205ENST00000485947 ASNSP08243 561 aa20.46■□□□□ 0.87
VIM-205ENST00000485947 SLC9C2Q5TAH2 1124 aa20.46■□□□□ 0.87
VIM-205ENST00000485947 GPAT2Q6NUI2 795 aa20.46■□□□□ 0.87
VIM-205ENST00000485947 TTC6Q86TZ1 520 aa20.46■□□□□ 0.87
VIM-205ENST00000485947 CRACR2BQ8N4Y2 399 aaPredicted RBP20.46■□□□□ 0.87
VIM-205ENST00000485947 PROCA1Q8NCQ7 364 aaPredicted RBP20.46■□□□□ 0.87
VIM-205ENST00000485947 ZNF280CQ8ND82 737 aa20.46■□□□□ 0.87
VIM-205ENST00000485947 HAUS7Q99871 368 aa20.46■□□□□ 0.87
VIM-205ENST00000485947 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.46■□□□□ 0.87
VIM-205ENST00000485947 EHD4Q9H223 541 aa20.46■□□□□ 0.87
VIM-205ENST00000485947 USP17L5A8MUK1 530 aa20.45■□□□□ 0.86
VIM-205ENST00000485947 PDE6AP16499 860 aa20.45■□□□□ 0.86
VIM-205ENST00000485947 USP5P45974 858 aa20.45■□□□□ 0.86
VIM-205ENST00000485947 LACTBP83111 547 aaPredicted RBP20.45■□□□□ 0.86
VIM-205ENST00000485947 C8orf34Q49A92 452 aa20.45■□□□□ 0.86
VIM-205ENST00000485947 RIOK1Q9BRS2 568 aaKnown RBP20.45■□□□□ 0.86
VIM-205ENST00000485947 WDR18Q9BV38 432 aa20.45■□□□□ 0.86
VIM-205ENST00000485947 PAG1Q9NWQ8 432 aa20.45■□□□□ 0.86
VIM-205ENST00000485947 DOCK1Q14185 1865 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 MAGEB6P1A0A0J9YX57 407 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 GOLIM4O00461 696 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 DYNLL1P63167 89 aaKnown RBP20.44■□□□□ 0.86
VIM-205ENST00000485947 TSHZ3Q63HK5 1081 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 MIGA1Q8NAN2 632 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 DNAJC2Q99543 621 aaKnown RBP20.44■□□□□ 0.86
VIM-205ENST00000485947 BACH2Q9BYV9 841 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 CRNKL1Q9BZJ0 848 aaKnown RBP20.44■□□□□ 0.86
VIM-205ENST00000485947 PALD1Q9ULE6 856 aa20.44■□□□□ 0.86
VIM-205ENST00000485947 NDUFB9Q9Y6M9 179 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms