RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TRIM47Q96LD4 638 aa26.42■■□□□ 1.82
USP40-215ENST00000484528 PIH1D3Q9NQM4 214 aaKnown RBP26.42■■□□□ 1.82
USP40-215ENST00000484528 EXOC6BQ9Y2D4 811 aa26.42■■□□□ 1.82
USP40-215ENST00000484528 TBC1D12O60347 775 aa26.41■■□□□ 1.82
USP40-215ENST00000484528 PRPF38BQ5VTL8 546 aaKnown RBP26.41■■□□□ 1.82
USP40-215ENST00000484528 FASTKD5Q7L8L6 764 aaKnown RBP26.41■■□□□ 1.82
USP40-215ENST00000484528 TMEM106CQ9BVX2 250 aa26.41■■□□□ 1.82
USP40-215ENST00000484528 NBPF11Q86T75 865 aa26.4■■□□□ 1.82
USP40-215ENST00000484528 MKI67P46013 3256 aaKnown RBP26.4■■□□□ 1.82
USP40-215ENST00000484528 LOC285556D6RIA3 1793 aa26.39■■□□□ 1.82
USP40-215ENST00000484528 FMNL1O95466 1100 aaPredicted RBP26.39■■□□□ 1.82
USP40-215ENST00000484528 RRP1BQ14684 758 aaKnown RBP26.39■■□□□ 1.82
USP40-215ENST00000484528 MAPKAPK5Q8IW41 473 aa26.39■■□□□ 1.82
USP40-215ENST00000484528 ZNF512BQ96KM6 892 aaPredicted RBP26.39■■□□□ 1.82
USP40-215ENST00000484528 NDUFB9Q9Y6M9 179 aa26.39■■□□□ 1.82
USP40-215ENST00000484528 MYH1P12882 1939 aa26.38■■□□□ 1.81
USP40-215ENST00000484528 BAG3O95817 575 aa26.38■■□□□ 1.81
USP40-215ENST00000484528 GNRH1P01148 92 aa26.38■■□□□ 1.81
USP40-215ENST00000484528 BCRP11274 1271 aa26.38■■□□□ 1.81
USP40-215ENST00000484528 OSBPP22059 807 aa26.38■■□□□ 1.81
USP40-215ENST00000484528 TGFBRAP1Q8WUH2 860 aa26.38■■□□□ 1.81
USP40-215ENST00000484528 SRRDQ9UH36 339 aa26.38■■□□□ 1.81
USP40-215ENST00000484528 SLC4A8Q2Y0W8 1093 aa26.37■■□□□ 1.81
USP40-215ENST00000484528 PLCG2P16885 1265 aa26.36■■□□□ 1.81
USP40-215ENST00000484528 DYNLL1P63167 89 aaKnown RBP26.36■■□□□ 1.81
USP40-215ENST00000484528 AACSQ86V21 672 aa26.36■■□□□ 1.81
USP40-215ENST00000484528 FLT1P17948 1338 aa26.36■■□□□ 1.81
USP40-215ENST00000484528 MYPNQ86TC9 1320 aa26.36■■□□□ 1.81
USP40-215ENST00000484528 DOCK3Q8IZD9 2030 aa26.36■■□□□ 1.81
USP40-215ENST00000484528 IDH1O75874 414 aaKnown RBP26.35■■□□□ 1.81
USP40-215ENST00000484528 CYP7A1P22680 504 aa26.35■■□□□ 1.81
USP40-215ENST00000484528 CAP2P40123 477 aa26.35■■□□□ 1.81
USP40-215ENST00000484528 PRMT2P55345 433 aa26.35■■□□□ 1.81
USP40-215ENST00000484528 PPP4CP60510 307 aa26.35■■□□□ 1.81
USP40-215ENST00000484528 SPP2Q13103 211 aa26.35■■□□□ 1.81
USP40-215ENST00000484528 TREML2Q5T2D2 321 aa26.35■■□□□ 1.81
USP40-215ENST00000484528 RAET1EQ8TD07 263 aa26.34■■□□□ 1.81
USP40-215ENST00000484528 SMCR8Q8TEV9 937 aaPredicted RBP26.34■■□□□ 1.81
USP40-215ENST00000484528 IL1RAPL2Q9NP60 686 aa26.34■■□□□ 1.81
USP40-215ENST00000484528 PI4KBQ9UBF8 816 aa26.34■■□□□ 1.81
USP40-215ENST00000484528 SAP30BPQ9UHR5 308 aaKnown RBP26.34■■□□□ 1.81
USP40-215ENST00000484528 HERC5Q9UII4 1024 aaKnown RBP26.34■■□□□ 1.81
USP40-215ENST00000484528 AGTPBP1Q9UPW5 1226 aa26.34■■□□□ 1.81
USP40-215ENST00000484528 APBB1O00213 710 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 SLC34A2O95436 690 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 HOXD10P28358 340 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 FCGRTP55899 365 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 PRKCZQ05513 592 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 ERC1Q8IUD2 1116 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 MIGA1Q8NAN2 632 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 BCL11AQ9H165 835 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 DHX36Q9H2U1 1008 aaKnown RBP26.33■■□□□ 1.81
USP40-215ENST00000484528 ANTXR1Q9H6X2 564 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 PALD1Q9ULE6 856 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 COG6Q9Y2V7 657 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 SLC45A1Q9Y2W3 748 aa26.33■■□□□ 1.81
USP40-215ENST00000484528 HMGCS2P54868 508 aa26.32■■□□□ 1.8
USP40-215ENST00000484528 ZNF280CQ8ND82 737 aa26.32■■□□□ 1.8
USP40-215ENST00000484528 DNAJC18Q9H819 358 aa26.32■■□□□ 1.8
USP40-215ENST00000484528 MTFR1Q15390 333 aa26.31■■□□□ 1.8
USP40-215ENST00000484528 SHROOM1Q2M3G4 852 aaPredicted RBP26.31■■□□□ 1.8
USP40-215ENST00000484528 CRACR2BQ8N4Y2 399 aaPredicted RBP26.31■■□□□ 1.8
USP40-215ENST00000484528 MAGEB6Q8N7X4 407 aa26.31■■□□□ 1.8
USP40-215ENST00000484528 GABRQQ9UN88 632 aa26.31■■□□□ 1.8
USP40-215ENST00000484528 CEP290O15078 2479 aa26.31■■□□□ 1.8
USP40-215ENST00000484528 USP17L5A8MUK1 530 aa26.3■■□□□ 1.8
USP40-215ENST00000484528 MS4A1P11836 297 aa26.3■■□□□ 1.8
USP40-215ENST00000484528 GRK4P32298 578 aa26.3■■□□□ 1.8
USP40-215ENST00000484528 PROCA1Q8NCQ7 364 aaPredicted RBP26.3■■□□□ 1.8
USP40-215ENST00000484528 RHPN1Q8TCX5 695 aa26.3■■□□□ 1.8
USP40-215ENST00000484528 GDF11O95390 407 aa26.29■■□□□ 1.8
USP40-215ENST00000484528 JAG1P78504 1218 aa26.29■■□□□ 1.8
USP40-215ENST00000484528 ANKRD13CQ8N6S4 541 aa26.29■■□□□ 1.8
USP40-215ENST00000484528 TRIM34Q9BYJ4 488 aa26.29■■□□□ 1.8
USP40-215ENST00000484528 HSP90AB4PQ58FF6 505 aa26.28■■□□□ 1.8
USP40-215ENST00000484528 BIN2Q9UBW5 565 aaPredicted RBP26.28■■□□□ 1.8
USP40-215ENST00000484528 DDX19BQ9UMR2 479 aa26.28■■□□□ 1.8
USP40-215ENST00000484528 NAV1Q8NEY1 1877 aa26.28■■□□□ 1.8
USP40-215ENST00000484528 AS3MTQ9HBK9 375 aa26.27■■□□□ 1.8
USP40-215ENST00000484528 PNMA3Q9UL41 463 aa26.27■■□□□ 1.8
USP40-215ENST00000484528 TNPO2O14787 897 aaKnown RBP26.26■■□□□ 1.79
USP40-215ENST00000484528 IGSF3O75054 1194 aa26.26■■□□□ 1.79
USP40-215ENST00000484528 MAP3K12Q12852 859 aa26.26■■□□□ 1.79
USP40-215ENST00000484528 MTMR2Q13614 643 aa26.26■■□□□ 1.79
USP40-215ENST00000484528 SIRT2Q8IXJ6 389 aa26.26■■□□□ 1.79
USP40-215ENST00000484528 TBC1D2Q9BYX2 928 aa26.26■■□□□ 1.79
USP40-215ENST00000484528 HLA-DOAP06340 250 aa26.25■■□□□ 1.79
USP40-215ENST00000484528 ASNSP08243 561 aa26.25■■□□□ 1.79
USP40-215ENST00000484528 USP5P45974 858 aa26.25■■□□□ 1.79
USP40-215ENST00000484528 FOXP4Q8IVH2 680 aaPredicted RBP26.25■■□□□ 1.79
USP40-215ENST00000484528 ZBTB40Q9NUA8 1239 aa26.25■■□□□ 1.79
USP40-215ENST00000484528 RCAN3Q9UKA8 241 aa26.25■■□□□ 1.79
USP40-215ENST00000484528 DDX60LQ5H9U9 1706 aaKnown RBP26.25■■□□□ 1.79
USP40-215ENST00000484528 FLT3LGP49771 235 aa26.24■■□□□ 1.79
USP40-215ENST00000484528 METTL16Q86W50 562 aaKnown RBP26.24■■□□□ 1.79
USP40-215ENST00000484528 RPAP2Q8IXW5 612 aaPredicted RBP26.24■■□□□ 1.79
USP40-215ENST00000484528 ASCC2Q9H1I8 757 aaPredicted RBP26.24■■□□□ 1.79
USP40-215ENST00000484528 ZBTB21Q9ULJ3 1066 aa26.24■■□□□ 1.79
USP40-215ENST00000484528 HMMRO75330 724 aa26.23■■□□□ 1.79
USP40-215ENST00000484528 CCL5P13501 91 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms