RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 GUCA1BQ9UMX6 200 aa21.32■■□□□ 1
CCDC88B-207ENST00000479965 CASP1P29466 404 aa21.32■■□□□ 1
CCDC88B-207ENST00000479965 GSPT2Q8IYD1 628 aaKnown RBP21.32■■□□□ 1
CCDC88B-207ENST00000479965 SLF1Q9BQI6 1058 aa21.32■■□□□ 1
CCDC88B-207ENST00000479965 MYO6Q9UM54 1294 aa21.32■■□□□ 1
CCDC88B-207ENST00000479965 LAMA4Q16363 1823 aa21.32■■□□□ 1
CCDC88B-207ENST00000479965 SMYD4Q8IYR2 804 aaPredicted RBP21.31■■□□□ 1
CCDC88B-207ENST00000479965 CAPZA3Q96KX2 299 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 A0A1B0GTH6 734 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 FXR1P51114 621 aaKnown RBP eCLIP21.31■■□□□ 1
CCDC88B-207ENST00000479965 MNAT1P51948 309 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 MDM2Q00987 491 aaPredicted RBP21.31■■□□□ 1
CCDC88B-207ENST00000479965 SYF2O95926 243 aaKnown RBP21.31■■□□□ 1
CCDC88B-207ENST00000479965 APPP05067 770 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 CDC25AP30304 524 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 IARSP41252 1262 aaKnown RBP21.31■■□□□ 1
CCDC88B-207ENST00000479965 WHAMMP3Q1A5X7 153 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 AMOTQ4VCS5 1084 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 LRRC24Q50LG9 513 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 LMOD2Q6P5Q4 547 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 RASGRP2Q7LDG7 609 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 SEC31BQ9NQW1 1179 aa21.31■■□□□ 1
CCDC88B-207ENST00000479965 MFAP3LO75121 409 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 ERLIN2O94905 339 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 SLC26A6Q9BXS9 759 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 SENP2Q9HC62 589 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 MMS22LQ6ZRQ5 1243 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 CRACR2AQ9BSW2 395 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 NAA15Q9BXJ9 866 aaKnown RBP21.3■■□□□ 1
CCDC88B-207ENST00000479965 HDAC6Q9UBN7 1215 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 TRIM10Q9UDY6 481 aa21.3■■□□□ 1
CCDC88B-207ENST00000479965 TTF2Q9UNY4 1162 aaKnown RBP21.3■■□□□ 1
CCDC88B-207ENST00000479965 BTBD18B2RXH4 712 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 FILIP1LQ4L180 1135 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 USP49Q70CQ1 688 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 NUP88Q99567 741 aaPredicted RBP21.29■■□□□ 1
CCDC88B-207ENST00000479965 PIK3C2AO00443 1686 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 A0A087WUV0 522 aaPredicted RBP21.29■■□□□ 1
CCDC88B-207ENST00000479965 MORC3Q14149 939 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 AEBP2Q6ZN18 517 aaPredicted RBP21.29■■□□□ 1
CCDC88B-207ENST00000479965 TOPAZ1Q8N9V7 1692 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 SRGAP2O75044 1071 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 CDKL5O76039 1030 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 STIM1Q13586 685 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 ZNF790Q6PG37 636 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 PUS7LQ9H0K6 701 aaKnown RBP21.29■■□□□ 1
CCDC88B-207ENST00000479965 KCNJ14Q9UNX9 436 aa21.29■■□□□ 1
CCDC88B-207ENST00000479965 PLCD1P51178 756 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 TUBB2AQ13885 445 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 TTC19Q6DKK2 380 aaPredicted RBP21.28■■□□□ 1
CCDC88B-207ENST00000479965 TUBB2BQ9BVA1 445 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 ANGEL1Q9UNK9 670 aaKnown RBP21.28■■□□□ 1
CCDC88B-207ENST00000479965 FOXP2O15409 715 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 GGCXP38435 758 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 TUBB4BP68371 445 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 NKX2-3Q8TAU0 364 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 EHD4Q9H223 541 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.28■■□□□ 1
CCDC88B-207ENST00000479965 SLIT1O75093 1534 aa21.28■■□□□ 1
CCDC88B-207ENST00000479965 PXDNQ92626 1479 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 GYPCP04921 128 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 RABL6Q3YEC7 729 aaPredicted RBP21.27■■□□□ 1
CCDC88B-207ENST00000479965 FBXW10Q5XX13 1052 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 MCTP2Q6DN12 878 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 ATG9AQ7Z3C6 839 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 ZMYM6O95789 1325 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 CNGA4Q8IV77 575 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 MSL3Q8N5Y2 521 aaKnown RBP21.27■■□□□ 1
CCDC88B-207ENST00000479965 WWC3Q9ULE0 1092 aa21.27■■□□□ 1
CCDC88B-207ENST00000479965 FAM237AA0A1B0GTK4 181 aa21.27■□□□□ 0.99
CCDC88B-207ENST00000479965 EXOC5O00471 708 aa21.27■□□□□ 0.99
CCDC88B-207ENST00000479965 EIF5P55010 431 aaKnown RBP21.27■□□□□ 0.99
CCDC88B-207ENST00000479965 ERVK-24P63145 666 aa21.27■□□□□ 0.99
CCDC88B-207ENST00000479965 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.27■□□□□ 0.99
CCDC88B-207ENST00000479965 VPS16Q9H269 839 aa21.27■□□□□ 0.99
CCDC88B-207ENST00000479965 TFR2Q9UP52 801 aa21.27■□□□□ 0.99
CCDC88B-207ENST00000479965 SYNRGQ9UMZ2 1314 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 GOLGA8AA7E2F4 631 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 PI16Q6UXB8 463 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 TEX2Q8IWB9 1127 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 FBXL16Q8N461 479 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 CTCFLQ8NI51 663 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 RBM33Q96EV2 1170 aaKnown RBP21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 CCDC85AQ96PX6 553 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 HPCAL4Q9UM19 191 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 B4E1Z4 1266 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 EBAG9O00559 213 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 MAP9Q49MG5 647 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 CYB5R4Q7L1T6 521 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 KAT14Q9H8E8 782 aa21.26■□□□□ 0.99
CCDC88B-207ENST00000479965 PES1O00541 588 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 N4BP3O15049 544 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 FAM69CQ0P6D2 419 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 APOA5Q6Q788 366 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 CCDC91Q7Z6B0 441 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 FAM76AQ8TAV0 307 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 STAMQ92783 540 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 KAT2BQ92831 832 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 PUS3Q9BZE2 481 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 MRC1P22897 1456 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 256.8 ms