RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	ST3GAL1	Q11201	340 aa		13.21	□□□□□ -0.3
APTX-223	ENST00000479656	TCP10	Q12799	353 aa		13.21	□□□□□ -0.3
APTX-223	ENST00000479656	INTS4	Q96HW7	963 aa	Known RBP	13.21	□□□□□ -0.3
APTX-223	ENST00000479656	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.21	□□□□□ -0.3
APTX-223	ENST00000479656	BRPF3	Q9ULD4	1205 aa		13.21	□□□□□ -0.3
APTX-223	ENST00000479656	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.21	□□□□□ -0.3
APTX-223	ENST00000479656	SPDYE2B	A6NHP3	402 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	SH2B2	O14492	632 aa	Predicted RBP	13.2	□□□□□ -0.3
APTX-223	ENST00000479656	ORC4	O43929	436 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	SPDYE6	P0CI01	402 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	TMEM67	Q5HYA8	995 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	FAM47A	Q5JRC9	791 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	TTC6	Q86TZ1	520 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	SLC44A5	Q8NCS7	719 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	IDI2	Q9BXS1	227 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	MKNK2	Q9HBH9	465 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	SENP2	Q9HC62	589 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	FAM198A	Q9UFP1	575 aa		13.2	□□□□□ -0.3
APTX-223	ENST00000479656	ANGEL1	Q9UNK9	670 aa	Known RBP	13.2	□□□□□ -0.3
APTX-223	ENST00000479656	NAV1	Q8NEY1	1877 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	PDIA3	P30101	505 aa	Known RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	GMPS	P49915	693 aa	Predicted RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	EVC	P57679	992 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	ZNF274	Q96GC6	653 aa	Predicted RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	CWC22	Q9HCG8	908 aa	Known RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	ZNF541	Q9H0D2	1346 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	KLF18	A0A0U1RQI7	1052 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	CLRN2	A0PK11	232 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	RPS12	P25398	132 aa	Known RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	CDK8	P49336	464 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	CCT2	P78371	535 aa	Known RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	RBM26	Q5T8P6	1007 aa	Known RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	C16orf86	Q6ZW13	317 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	MTMR14	Q8NCE2	650 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	LY9	Q9HBG7	655 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	MYOZ2	Q9NPC6	264 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	CHMP5	Q9NZZ3	219 aa		13.19	□□□□□ -0.3
APTX-223	ENST00000479656	ZNF70	Q9UC06	446 aa	Predicted RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.19	□□□□□ -0.3
APTX-223	ENST00000479656	ROBO3	Q96MS0	1386 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	ERICH2	A1L162	156 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	TSPY2	A6NKD2	308 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	PFKFB2	O60825	505 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	LAMB1	P07942	1786 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	MYH1	P12882	1939 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	TFAP4	Q01664	338 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	SCRN1	Q12765	414 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	SART3	Q15020	963 aa	Known RBP	13.18	□□□□□ -0.3
APTX-223	ENST00000479656	FOCAD	Q5VW36	1801 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	NFXL1	Q6ZNB6	911 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	RAB11FIP4	Q86YS3	637 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.18	□□□□□ -0.3
APTX-223	ENST00000479656	DPF2	Q92785	391 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.18	□□□□□ -0.3
APTX-223	ENST00000479656	UBAC1	Q9BSL1	405 aa		13.18	□□□□□ -0.3
APTX-223	ENST00000479656	CNOT7	Q9UIV1	285 aa	Known RBP	13.18	□□□□□ -0.3
APTX-223	ENST00000479656	DDTL	A6NHG4	134 aa	Predicted RBP	13.17	□□□□□ -0.3
APTX-223	ENST00000479656	TCP10L2	B9ZVM9	353 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	WNT10B	O00744	389 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	NPM3	O75607	178 aa	Known RBP	13.17	□□□□□ -0.3
APTX-223	ENST00000479656	LIFR	P42702	1097 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	ZNF280A	P59817	542 aa	Predicted RBP	13.17	□□□□□ -0.3
APTX-223	ENST00000479656	WTAP	Q15007	396 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	NBPF9	Q3BBW0	867 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	IQCA1	Q86XH1	822 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.17	□□□□□ -0.3
APTX-223	ENST00000479656	MICALL2	Q8IY33	904 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	GTF3C6	Q969F1	213 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	ZBED3	Q96IU2	234 aa	Predicted RBP	13.17	□□□□□ -0.3
APTX-223	ENST00000479656	MTA3	Q9BTC8	594 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	RNF181	Q9P0P0	153 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	SMC3	Q9UQE7	1217 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	ECM29	Q5VYK3	1845 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	TNKS	O95271	1327 aa		13.17	□□□□□ -0.3
APTX-223	ENST00000479656	NMT2	O60551	498 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	ENTPD3	O75355	529 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	HLA-DOA	P06340	250 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	SLURP2	P0DP57	97 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	RASA1	P20936	1047 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	GABPA	Q06546	454 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	SEC23A	Q15436	765 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	GPR162	Q16538	588 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	SH3BP5L	Q7L8J4	393 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	SGMS1	Q86VZ5	419 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	DHX36	Q9H2U1	1008 aa	Known RBP	13.16	□□□□□ -0.3
APTX-223	ENST00000479656	ZNF287	Q9HBT7	754 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	NCOA5	Q9HCD5	579 aa	Known RBP	13.16	□□□□□ -0.3
APTX-223	ENST00000479656	TMOD2	Q9NZR1	351 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	DDX60L	Q5H9U9	1706 aa	Known RBP	13.16	□□□□□ -0.3
APTX-223	ENST00000479656	CCDC69	A6NI79	296 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	EGFR	P00533	1210 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	MMP14	P50281	582 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	SPDYE2	Q495Y8	402 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	SAMD7	Q7Z3H4	446 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	TMTC2	Q8N394	836 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	ENAH	Q8N8S7	591 aa	Predicted RBP	13.16	□□□□□ -0.3
APTX-223	ENST00000479656	VEZT	Q9HBM0	779 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	SERPINB13	Q9UIV8	391 aa		13.16	□□□□□ -0.3
APTX-223	ENST00000479656	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.16	□□□□□ -0.3
APTX-223	ENST00000479656	HPS5	Q9UPZ3	1129 aa		13.16	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms