RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 CRCPO75575 148 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 INF2Q27J81 1249 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 DPP8Q6V1X1 898 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 LRRC2Q9BYS8 371 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 PARD3Q8TEW0 1356 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 GAS8O95995 478 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 ITGA6P23229 1130 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 RASSF2P50749 326 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 AFAP1L2Q8N4X5 818 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 BAG1Q99933 345 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 VCX3AQ9NNX9 186 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 PFDN4Q9NQP4 134 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 ACTN4O43707 911 aaKnown RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 PNMA8AQ86V59 439 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 IFT20Q8IY31 132 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 GSDMBQ8TAX9 411 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 MICAL1Q8TDZ2 1067 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 CABS1Q96KC9 395 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 HELLSQ9NRZ9 838 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 ZFYVE16Q7Z3T8 1539 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 MSANTD4Q8NCY6 345 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 NAPGQ99747 312 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 CETN3O15182 167 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 PPFIA3O75145 1194 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 LARGE2Q8N3Y3 721 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 BEGAINQ9BUH8 593 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 METTL22Q9BUU2 404 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 BCAP29Q9UHQ4 241 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 AKR1B15C9JRZ8 316 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 RAB3GAP1Q15042 981 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 CCDC122Q5T0U0 273 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 SLAIN2Q9P270 581 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 PBRM1Q86U86 1689 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 BACH1O14867 736 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 F13A1P00488 732 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 UAP1Q16222 522 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 MAK16Q9BXY0 300 aaKnown RBP9.85□□□□□ -0.83
SYNE1-224ENST00000478916 PLCB1Q9NQ66 1216 aa9.85□□□□□ -0.83
SYNE1-224ENST00000478916 PSMD6Q15008 389 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 GEN1Q17RS7 908 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-224ENST00000478916 RPAINQ86UA6 219 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 SLC52A2Q9HAB3 445 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 MUM1Q2TAK8 710 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 C8orf74Q6P047 294 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 NECAB1Q8N987 351 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-224ENST00000478916 HS2ST1Q7LGA3 356 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 SNX21Q969T3 373 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 ALDH1B1P30837 517 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 CEP85Q6P2H3 762 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 HVCN1Q96D96 273 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 ZMAT2Q96NC0 199 aaKnown RBP9.84□□□□□ -0.83
SYNE1-224ENST00000478916 MYRIPQ8NFW9 859 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 PTPRKQ15262 1439 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 APBA3O96018 575 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 IGHDP01880 384 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 RBBP5Q15291 538 aaKnown RBP9.84□□□□□ -0.83
SYNE1-224ENST00000478916 BAIAP2L1Q9UHR4 511 aa9.84□□□□□ -0.83
SYNE1-224ENST00000478916 GOLGA6BA6NDN3 693 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 EYA2O00167 538 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 MBD4O95243 580 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 TAF12Q16514 161 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 SKAP1Q86WV1 359 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 FLAD1Q8NFF5 587 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 GLT8D2Q9H1C3 349 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 JAG2Q9Y219 1238 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 DIXDC1Q155Q3 683 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 RUFY3Q7L099 469 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 NIM1KQ8IY84 436 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 FAM89AQ96GI7 184 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 IVNS1ABPQ9Y6Y0 642 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 NEO1Q92859 1461 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 DNM1Q05193 864 aaKnown RBP9.83□□□□□ -0.84
SYNE1-224ENST00000478916 ORAI2Q96SN7 254 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.83□□□□□ -0.84
SYNE1-224ENST00000478916 KAT6BQ8WYB5 2073 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 RIOK3O14730 519 aaKnown RBP9.83□□□□□ -0.84
SYNE1-224ENST00000478916 VAMP4O75379 141 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 LUC7L3O95232 432 aaKnown RBP9.83□□□□□ -0.84
SYNE1-224ENST00000478916 ERCC5P28715 1186 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-224ENST00000478916 MAP3K21Q5TCX8 1036 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 NOD1Q9Y239 953 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 PPFIA1Q13136 1202 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 DNMT1P26358 1616 aaKnown RBP9.83□□□□□ -0.84
SYNE1-224ENST00000478916 SBNO2Q9Y2G9 1366 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 COG7P83436 770 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 SAP30BPQ9UHR5 308 aaKnown RBP9.83□□□□□ -0.84
SYNE1-224ENST00000478916 FAN1Q9Y2M0 1017 aa9.83□□□□□ -0.84
SYNE1-224ENST00000478916 SLC8A1P32418 973 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 TRIM14Q14142 442 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 TRIM4Q9C037 500 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 DHX58Q96C10 678 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 ZNF408Q9H9D4 720 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 SPTLC2O15270 562 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 OAS2P29728 719 aaKnown RBP9.82□□□□□ -0.84
SYNE1-224ENST00000478916 MARCKSP29966 332 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-224ENST00000478916 DHX32Q7L7V1 743 aaKnown RBP9.82□□□□□ -0.84
SYNE1-224ENST00000478916 BRAPQ7Z569 592 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 ITIH3Q06033 890 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms