RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 FASTKD5Q7L8L6 764 aaKnown RBP14.52□□□□□ -0.09
SYNE1-221ENST00000472563 OTOP1Q7RTM1 612 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 PRRT2Q7Z6L0 340 aaPredicted RBP14.52□□□□□ -0.09
SYNE1-221ENST00000472563 CD99L2Q8TCZ2 262 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 HAUS7Q99871 368 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 RIOK1Q9BRS2 568 aaKnown RBP14.52□□□□□ -0.09
SYNE1-221ENST00000472563 PALD1Q9ULE6 856 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 TRIM17Q9Y577 477 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 PCDHB15Q9Y5E8 787 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 CASP8AP2Q9UKL3 1982 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 SMARCA5O60264 1052 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-221ENST00000472563 USP5P45974 858 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 RRP1BQ14684 758 aaKnown RBP14.51□□□□□ -0.09
SYNE1-221ENST00000472563 ARHGEF6Q15052 776 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 GPAT2Q6NUI2 795 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 TBC1D2Q9BYX2 928 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 BOLA2Q9H3K6 86 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 EFCC1Q9HA90 598 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 PAG1Q9NWQ8 432 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 OTOFQ9HC10 1997 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 AKAP11Q9UKA4 1901 aa14.51□□□□□ -0.09
SYNE1-221ENST00000472563 ZNF532Q9HCE3 1301 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 MAGEB6P1A0A0J9YX57 407 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 TCRBV5S4A2TA0A5A2 114 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 HLA-DOAP06340 250 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 RGS19P49795 217 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 EDC3Q96F86 508 aaKnown RBP14.5□□□□□ -0.09
SYNE1-221ENST00000472563 DNAJC18Q9H819 358 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 ECHDC1Q9NTX5 307 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 SAP30BPQ9UHR5 308 aaKnown RBP14.5□□□□□ -0.09
SYNE1-221ENST00000472563 SLC45A1Q9Y2W3 748 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 MYH2Q9UKX2 1941 aa14.5□□□□□ -0.09
SYNE1-221ENST00000472563 TRIM75PA6NK02 468 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 C17orf99Q6UX52 265 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 TTC6Q86TZ1 520 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 CCDC84Q86UT8 332 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-221ENST00000472563 CRACR2BQ8N4Y2 399 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-221ENST00000472563 ZNF280CQ8ND82 737 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 PARK7Q99497 189 aaKnown RBP14.49□□□□□ -0.09
SYNE1-221ENST00000472563 TRIM34Q9BYJ4 488 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.49□□□□□ -0.09
SYNE1-221ENST00000472563 EHD4Q9H223 541 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 GINM1Q9NU53 330 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-221ENST00000472563 PTPN22Q9Y2R2 807 aa14.49□□□□□ -0.09
SYNE1-221ENST00000472563 ADGRA2Q96PE1 1338 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 USP17L5A8MUK1 530 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 ASNSP08243 561 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 ADD2P35612 726 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 CAP1Q01518 475 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 SPP2Q13103 211 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 GADL1Q6ZQY3 521 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 GPATCH3Q96I76 525 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 WDR18Q9BV38 432 aa14.48□□□□□ -0.09
SYNE1-221ENST00000472563 CRNKL1Q9BZJ0 848 aaKnown RBP14.48□□□□□ -0.09
SYNE1-221ENST00000472563 JAG1P78504 1218 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 LACTBP83111 547 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-221ENST00000472563 KIF22Q14807 665 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 UBE3CQ15386 1083 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 PROCA1Q8NCQ7 364 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-221ENST00000472563 CRBNQ96SW2 442 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 AS3MTQ9HBK9 375 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 CPA4Q9UI42 421 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 SERPINB13Q9UIV8 391 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 AGTPBP1Q9UPW5 1226 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 LAMB1P07942 1786 aa14.47□□□□□ -0.09
SYNE1-221ENST00000472563 GNRH1P01148 92 aa14.46□□□□□ -0.09
SYNE1-221ENST00000472563 CYP2C8P10632 490 aa14.46□□□□□ -0.09
SYNE1-221ENST00000472563 AAMPQ13685 434 aa14.46□□□□□ -0.09
SYNE1-221ENST00000472563 ZSCAN25Q6NSZ9 544 aa14.46□□□□□ -0.09
SYNE1-221ENST00000472563 TATDN1Q6P1N9 297 aa14.46□□□□□ -0.09
SYNE1-221ENST00000472563 LCORLQ8N3X6 602 aa14.46□□□□□ -0.09
SYNE1-221ENST00000472563 MAST2Q6P0Q8 1798 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 BCRP11274 1271 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 SLC4A8Q2Y0W8 1093 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 SH3D19Q5HYK7 790 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 ARHGAP39Q9C0H5 1083 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 ARMT1Q9H993 441 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 TAOK2Q9UL54 1235 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 ZBTB21Q9ULJ3 1066 aa14.45□□□□□ -0.1
SYNE1-221ENST00000472563 MBD4O95243 580 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 GDF11O95390 407 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 POLR3DP05423 398 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-221ENST00000472563 PLCD1P51178 756 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 HMGCS2P54868 508 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 PRMT2P55345 433 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 SOX10P56693 466 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 BACE1P56817 501 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 PABPC4Q13310 644 aaKnown RBP eCLIP14.44□□□□□ -0.1
SYNE1-221ENST00000472563 HDAC1Q13547 482 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-221ENST00000472563 SLFNL1Q499Z3 407 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 ARMC5Q96C12 935 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 DCP1AQ9NPI6 582 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-221ENST00000472563 MCM9Q9NXL9 1143 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 PNMA3Q9UL41 463 aa14.44□□□□□ -0.1
SYNE1-221ENST00000472563 TTC41PQ6P2S7 1318 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 C19orf81C9J6K1 198 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 GH2P01242 217 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 PSMC4P43686 418 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 MLLT1Q03111 559 aaPredicted RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms