RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 SIL1Q9H173 461 aa22.95■■□□□ 1.26
SHH-205ENST00000472308 PTPRCP08575 1304 aa22.94■■□□□ 1.26
SHH-205ENST00000472308 ADORA1P30542 326 aa22.94■■□□□ 1.26
SHH-205ENST00000472308 BTDP43251 543 aa22.94■■□□□ 1.26
SHH-205ENST00000472308 SPP2Q13103 211 aa22.94■■□□□ 1.26
SHH-205ENST00000472308 MAP3K21Q5TCX8 1036 aa22.94■■□□□ 1.26
SHH-205ENST00000472308 FAM163AQ96GL9 167 aaPredicted RBP22.94■■□□□ 1.26
SHH-205ENST00000472308 UBE2OQ9C0C9 1292 aaKnown RBP22.94■■□□□ 1.26
SHH-205ENST00000472308 TBC1D12O60347 775 aa22.93■■□□□ 1.26
SHH-205ENST00000472308 CIAO1O76071 339 aa22.93■■□□□ 1.26
SHH-205ENST00000472308 RHBDL3P58872 404 aa22.93■■□□□ 1.26
SHH-205ENST00000472308 RASGRF1Q13972 1273 aa22.93■■□□□ 1.26
SHH-205ENST00000472308 DZIP1Q86YF9 867 aaKnown RBP22.93■■□□□ 1.26
SHH-205ENST00000472308 ASCC2Q9H1I8 757 aaPredicted RBP22.93■■□□□ 1.26
SHH-205ENST00000472308 HMGCS2P54868 508 aa22.92■■□□□ 1.26
SHH-205ENST00000472308 RRP1BQ14684 758 aaKnown RBP22.92■■□□□ 1.26
SHH-205ENST00000472308 CCDC102BQ68D86 513 aa22.92■■□□□ 1.26
SHH-205ENST00000472308 ZNF280CQ8ND82 737 aa22.92■■□□□ 1.26
SHH-205ENST00000472308 ZNF384Q8TF68 577 aa22.92■■□□□ 1.26
SHH-205ENST00000472308 CEP126Q9P2H0 1117 aa22.92■■□□□ 1.26
SHH-205ENST00000472308 MROH7-TTC4A0A0A0MT08 1334 aa22.91■■□□□ 1.26
SHH-205ENST00000472308 COL6A1P12109 1028 aa22.91■■□□□ 1.26
SHH-205ENST00000472308 ZGPATQ8N5A5 531 aaKnown RBP22.91■■□□□ 1.26
SHH-205ENST00000472308 MORF4L1Q9UBU8 362 aa22.91■■□□□ 1.26
SHH-205ENST00000472308 FBXO3Q9UK99 471 aa22.91■■□□□ 1.26
SHH-205ENST00000472308 COL2A1P02458 1487 aaPredicted RBP22.91■■□□□ 1.26
SHH-205ENST00000472308 PRKAR2AP13861 404 aaKnown RBP22.9■■□□□ 1.26
SHH-205ENST00000472308 OSBPL5Q9H0X9 879 aaPredicted RBP22.9■■□□□ 1.26
SHH-205ENST00000472308 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.9■■□□□ 1.26
SHH-205ENST00000472308 ABCF2Q9UG63 623 aa22.9■■□□□ 1.26
SHH-205ENST00000472308 PDS5AQ29RF7 1337 aaKnown RBP22.89■■□□□ 1.26
SHH-205ENST00000472308 PEX10O60683 326 aa22.89■■□□□ 1.25
SHH-205ENST00000472308 SH3D19Q5HYK7 790 aa22.89■■□□□ 1.25
SHH-205ENST00000472308 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.89■■□□□ 1.25
SHH-205ENST00000472308 GUCD1Q96NT3 240 aa22.89■■□□□ 1.25
SHH-205ENST00000472308 ATAD5Q96QE3 1844 aa22.89■■□□□ 1.25
SHH-205ENST00000472308 PRUNE2Q8WUY3 3088 aa22.88■■□□□ 1.25
SHH-205ENST00000472308 GPR75-ASB3A0A0A6YYF3 556 aa22.88■■□□□ 1.25
SHH-205ENST00000472308 NPM3O75607 178 aaKnown RBP22.88■■□□□ 1.25
SHH-205ENST00000472308 CYP2B6P20813 491 aa22.88■■□□□ 1.25
SHH-205ENST00000472308 MECOMQ03112 1051 aa22.88■■□□□ 1.25
SHH-205ENST00000472308 PABPC4Q13310 644 aaKnown RBP eCLIP22.88■■□□□ 1.25
SHH-205ENST00000472308 LRRC26Q2I0M4 334 aa22.88■■□□□ 1.25
SHH-205ENST00000472308 SLF2Q8IX21 1173 aa22.88■■□□□ 1.25
SHH-205ENST00000472308 SSH1Q8WYL5 1049 aa22.88■■□□□ 1.25
SHH-205ENST00000472308 CDH23Q9H251 3354 aa22.87■■□□□ 1.25
SHH-205ENST00000472308 ZNF521Q96K83 1311 aa22.87■■□□□ 1.25
SHH-205ENST00000472308 CAP2P40123 477 aa22.87■■□□□ 1.25
SHH-205ENST00000472308 IL15P40933 162 aaPredicted RBP22.87■■□□□ 1.25
SHH-205ENST00000472308 TBC1D2Q9BYX2 928 aa22.87■■□□□ 1.25
SHH-205ENST00000472308 TXNRD2Q9NNW7 524 aa22.87■■□□□ 1.25
SHH-205ENST00000472308 PA2G4Q9UQ80 394 aaKnown RBP22.87■■□□□ 1.25
SHH-205ENST00000472308 POTEB2H3BUK9 544 aa22.86■■□□□ 1.25
SHH-205ENST00000472308 XRCC5P13010 732 aaKnown RBP22.86■■□□□ 1.25
SHH-205ENST00000472308 MDM2Q00987 491 aaPredicted RBP22.86■■□□□ 1.25
SHH-205ENST00000472308 LHX8Q68G74 356 aa22.86■■□□□ 1.25
SHH-205ENST00000472308 CACNB2Q08289 660 aaPredicted RBP22.85■■□□□ 1.25
SHH-205ENST00000472308 USP17L5A8MUK1 530 aa22.84■■□□□ 1.25
SHH-205ENST00000472308 TIMM10P62072 90 aa22.84■■□□□ 1.25
SHH-205ENST00000472308 SPTY2D1Q68D10 685 aaPredicted RBP22.84■■□□□ 1.25
SHH-205ENST00000472308 FAM109BQ6ICB4 259 aaPredicted RBP22.84■■□□□ 1.25
SHH-205ENST00000472308 SOCS4Q8WXH5 440 aa22.84■■□□□ 1.25
SHH-205ENST00000472308 USP6NLQ92738 828 aa22.84■■□□□ 1.25
SHH-205ENST00000472308 NUDT12Q9BQG2 462 aa22.84■■□□□ 1.25
SHH-205ENST00000472308 CCND3P30281 292 aaPredicted RBP22.83■■□□□ 1.25
SHH-205ENST00000472308 MTMR2Q13614 643 aa22.83■■□□□ 1.25
SHH-205ENST00000472308 CCL14Q16627 93 aa22.83■■□□□ 1.25
SHH-205ENST00000472308 P2RX7Q99572 595 aaKnown RBP22.83■■□□□ 1.25
SHH-205ENST00000472308 SIPA1L1O43166 1804 aa22.82■■□□□ 1.24
SHH-205ENST00000472308 UBTFL1P0CB47 393 aaPredicted RBP22.82■■□□□ 1.24
SHH-205ENST00000472308 ZKSCAN1P17029 563 aaPredicted RBP22.82■■□□□ 1.24
SHH-205ENST00000472308 HOXA7P31268 230 aaPredicted RBP22.82■■□□□ 1.24
SHH-205ENST00000472308 HERVK_113P62684 666 aa22.82■■□□□ 1.24
SHH-205ENST00000472308 IRX3P78415 501 aaPredicted RBP22.82■■□□□ 1.24
SHH-205ENST00000472308 JAG1P78504 1218 aa22.82■■□□□ 1.24
SHH-205ENST00000472308 POTEEQ6S8J3 1075 aa22.82■■□□□ 1.24
SHH-205ENST00000472308 WDR18Q9BV38 432 aa22.82■■□□□ 1.24
SHH-205ENST00000472308 COPRSQ9NQ92 184 aa22.82■■□□□ 1.24
SHH-205ENST00000472308 MAST2Q6P0Q8 1798 aa22.81■■□□□ 1.24
SHH-205ENST00000472308 ERICH6Q7L0X2 663 aa22.81■■□□□ 1.24
SHH-205ENST00000472308 GPRC5AQ8NFJ5 357 aa22.81■■□□□ 1.24
SHH-205ENST00000472308 NSUN4Q96CB9 384 aaKnown RBP22.81■■□□□ 1.24
SHH-205ENST00000472308 FAM161BQ96MY7 647 aa22.81■■□□□ 1.24
SHH-205ENST00000472308 PORCNQ9H237 461 aa22.81■■□□□ 1.24
SHH-205ENST00000472308 AS3MTQ9HBK9 375 aa22.81■■□□□ 1.24
SHH-205ENST00000472308 RBPJLQ9UBG7 517 aa22.81■■□□□ 1.24
SHH-205ENST00000472308 BACE1P56817 501 aa22.8■■□□□ 1.24
SHH-205ENST00000472308 SHROOM1Q2M3G4 852 aaPredicted RBP22.8■■□□□ 1.24
SHH-205ENST00000472308 MORN1Q5T089 497 aa22.8■■□□□ 1.24
SHH-205ENST00000472308 PI16Q6UXB8 463 aa22.8■■□□□ 1.24
SHH-205ENST00000472308 XAGE2Q96GT9 111 aa22.8■■□□□ 1.24
SHH-205ENST00000472308 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.8■■□□□ 1.24
SHH-205ENST00000472308 FRMPD3Q5JV73 1810 aa22.8■■□□□ 1.24
SHH-205ENST00000472308 A0A1B0GUL7 405 aa22.79■■□□□ 1.24
SHH-205ENST00000472308 MAP4K4O95819 1239 aaPredicted RBP22.79■■□□□ 1.24
SHH-205ENST00000472308 Q3C1V9 767 aa22.79■■□□□ 1.24
SHH-205ENST00000472308 TRMT44Q8IYL2 757 aaKnown RBP22.79■■□□□ 1.24
SHH-205ENST00000472308 HMG20BQ9P0W2 317 aa22.79■■□□□ 1.24
SHH-205ENST00000472308 HERC5Q9UII4 1024 aaKnown RBP22.79■■□□□ 1.24
SHH-205ENST00000472308 MUC3AQ02505 3323 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms