RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ATP8A2Q9NTI2 1148 aa7.12□□□□□ -1.27
USP39-213ENST00000467885 GPRC5DQ9NZD1 345 aa7.12□□□□□ -1.27
USP39-213ENST00000467885 ZNF70Q9UC06 446 aaPredicted RBP7.12□□□□□ -1.27
USP39-213ENST00000467885 FAM198AQ9UFP1 575 aa7.12□□□□□ -1.27
USP39-213ENST00000467885 PGAP2Q9UHJ9 254 aa7.12□□□□□ -1.27
USP39-213ENST00000467885 HDAC9Q9UKV0 1011 aa7.12□□□□□ -1.27
USP39-213ENST00000467885 PALD1Q9ULE6 856 aa7.12□□□□□ -1.27
USP39-213ENST00000467885 RBM8AQ9Y5S9 174 aaKnown RBP7.12□□□□□ -1.27
USP39-213ENST00000467885 CHD4Q14839 1912 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 BRCA1P38398 1863 aaKnown RBP7.11□□□□□ -1.27
USP39-213ENST00000467885 RPAP1Q9BWH6 1393 aaPredicted RBP7.11□□□□□ -1.27
USP39-213ENST00000467885 SPEF2Q9C093 1822 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 H7C1D1 291 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 SLC27A2O14975 620 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 APPP05067 770 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 FGRP09769 529 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 PLCD1P51178 756 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 RBM5P52756 815 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP39-213ENST00000467885 COL9A3Q14050 684 aaPredicted RBP7.11□□□□□ -1.27
USP39-213ENST00000467885 C12orf60Q5U649 245 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 SH3BP5LQ7L8J4 393 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 CERS3Q8IU89 383 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 CRNKL1Q9BZJ0 848 aaKnown RBP7.11□□□□□ -1.27
USP39-213ENST00000467885 NBPF3Q9H094 633 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 CTNNA3Q9UI47 895 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 ANAPC4Q9UJX5 808 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 LHX6Q9UPM6 363 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 PCDHGA4Q9Y5G9 962 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 SNX14Q9Y5W7 946 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 FER1L6Q2WGJ9 1857 aa7.11□□□□□ -1.27
USP39-213ENST00000467885 CYP2D7A0A087X1C5 515 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 TULP1O00294 542 aaPredicted RBP7.1□□□□□ -1.27
USP39-213ENST00000467885 ZNF213O14771 459 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 SLC34A2O95436 690 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 CACNB3P54284 484 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 EXOSC10Q01780 885 aaKnown RBP7.1□□□□□ -1.27
USP39-213ENST00000467885 MAP3K10Q02779 954 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 NFIAQ12857 509 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 ADCK5Q3MIX3 580 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 TBC1D10BQ4KMP7 808 aaPredicted RBP7.1□□□□□ -1.27
USP39-213ENST00000467885 FKBP1CQ5VVH2 108 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 MAPKAPK5Q8IW41 473 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 TEX11Q8IYF3 940 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 CACNA1SQ13698 1873 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 A0A1B0GUL6 1792 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 ARAP2Q8WZ64 1704 aa7.1□□□□□ -1.27
USP39-213ENST00000467885 ASTN2O75129 1339 aaPredicted RBP7.09□□□□□ -1.27
USP39-213ENST00000467885 DDTLA6NHG4 134 aaPredicted RBP7.09□□□□□ -1.27
USP39-213ENST00000467885 ENTPD3O75355 529 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 SLURP2P0DP57 97 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 CYP2D6P10635 497 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 USP5P45974 858 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 ANAPC15P60006 121 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 CTDSPL2Q05D32 466 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 STOX1Q6ZVD7 989 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 METTL16Q86W50 562 aaKnown RBP7.09□□□□□ -1.27
USP39-213ENST00000467885 FOXP4Q8IVH2 680 aaPredicted RBP7.09□□□□□ -1.27
USP39-213ENST00000467885 FAM151AQ8WW52 585 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 NOL10Q9BSC4 688 aaKnown RBP7.09□□□□□ -1.27
USP39-213ENST00000467885 NACAP1Q9BZK3 213 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 TM6SF1Q9BZW5 370 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 RRAGCQ9HB90 399 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 MCM9Q9NXL9 1143 aa7.09□□□□□ -1.27
USP39-213ENST00000467885 RBM19Q9Y4C8 960 aaKnown RBP7.09□□□□□ -1.27
USP39-213ENST00000467885 ZC3H4Q9UPT8 1303 aaKnown RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 SCN9AQ15858 1988 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 CLRN2A0PK11 232 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 MINDY4BA8MYZ0 360 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 TCP10L2B9ZVM9 353 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 E7EWF7 191 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 STK25O00506 426 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 HAND2P61296 217 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 GABPAQ06546 454 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 PPARAQ07869 468 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 TCP10Q12799 353 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 IMMTQ16891 758 aaKnown RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 FAM83AQ86UY5 434 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 TRPM4Q8TD43 1214 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 DYNLL2Q96FJ2 89 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 TEPSINQ96N21 525 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 OSBPL5Q9H0X9 879 aaPredicted RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 NAPBQ9H115 298 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 ALDH8A1Q9H2A2 487 aaPredicted RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 TAF1DQ9H5J8 278 aaPredicted RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 UPF2Q9HAU5 1272 aaKnown RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 ADARB2Q9NS39 739 aaKnown RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 ZSWIM5Q9P217 1185 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 SAP30BPQ9UHR5 308 aaKnown RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 SCAF8Q9UPN6 1271 aaKnown RBP7.08□□□□□ -1.28
USP39-213ENST00000467885 CNTNAP1P78357 1384 aa7.08□□□□□ -1.28
USP39-213ENST00000467885 ZMYM6O95789 1325 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 FLT1P17948 1338 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 ARFGEF1Q9Y6D6 1849 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 POLR3DP05423 398 aaPredicted RBP7.07□□□□□ -1.28
USP39-213ENST00000467885 VEGFAP15692 232 aaPredicted RBP7.07□□□□□ -1.28
USP39-213ENST00000467885 ZKSCAN1P17029 563 aaPredicted RBP7.07□□□□□ -1.28
USP39-213ENST00000467885 EPHX2P34913 555 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 TDO2P48775 406 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 PICALMQ13492 652 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 RASA3Q14644 834 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms