RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 CTAGE1Q96RT6 745 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 IRX2Q9BZI1 471 aaPredicted RBP22.48■■□□□ 1.19
SDF4-205ENST00000465727 ZSWIM4Q9H7M6 989 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 PARP4Q9UKK3 1724 aaKnown RBP22.47■■□□□ 1.19
SDF4-205ENST00000465727 FOXN1O15353 648 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 MAGEA9P43362 315 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 RAD9BQ6WBX8 426 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 SPATA20Q8TB22 786 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 RAPGEF4Q8WZA2 1011 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 TMEM87BQ96K49 555 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 TEX13AQ9BXU3 409 aaPredicted RBP22.47■■□□□ 1.19
SDF4-205ENST00000465727 ABCB6Q9NP58 842 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 CWC25Q9NXE8 425 aaPredicted RBP22.47■■□□□ 1.19
SDF4-205ENST00000465727 FBXO3Q9UK99 471 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 AKAP2Q9Y2D5 859 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 LTBP4Q8N2S1 1624 aa22.47■■□□□ 1.19
SDF4-205ENST00000465727 PHKG2P15735 406 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 FECHP22830 423 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 PTPREP23469 700 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 KIF4BQ2VIQ3 1234 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 LRRC24Q50LG9 513 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 ANKLE2Q86XL3 938 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 NOSTRINQ8IVI9 506 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 WASF1Q92558 559 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.46■■□□□ 1.19
SDF4-205ENST00000465727 CEP126Q9P2H0 1117 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 WDR17Q8IZU2 1322 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 CTAGE15A4D2H0 777 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 SEMA3EO15041 775 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 CTAGE8P0CG41 777 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 CASP8Q14790 479 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 ZNF569Q5MCW4 686 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 NUP188Q5SRE5 1749 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 CTAGE6Q86UF2 777 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 CNGA4Q8IV77 575 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 CTAGE4Q8IX94 777 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 STK11IPQ8N1F8 1099 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 IGSF22Q8N9C0 903 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 SAMSN1Q9NSI8 373 aaKnown RBP22.46■■□□□ 1.19
SDF4-205ENST00000465727 FAN1Q9Y2M0 1017 aa22.46■■□□□ 1.19
SDF4-205ENST00000465727 GPAA1O43292 621 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 PBX1P40424 430 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 MAPK8IP2Q13387 824 aaPredicted RBP22.45■■□□□ 1.18
SDF4-205ENST00000465727 NTRK3Q16288 839 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 CERKQ8TCT0 537 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 ZBTB43O43298 467 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 MFAP3LO75121 409 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 WDR93Q6P2C0 686 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 TRMT44Q8IYL2 757 aaKnown RBP22.45■■□□□ 1.18
SDF4-205ENST00000465727 NAPGQ99747 312 aaPredicted RBP22.45■■□□□ 1.18
SDF4-205ENST00000465727 PUS7LQ9H0K6 701 aaKnown RBP22.45■■□□□ 1.18
SDF4-205ENST00000465727 VIPAS39Q9H9C1 493 aa22.45■■□□□ 1.18
SDF4-205ENST00000465727 FBXO2Q9UK22 296 aaPredicted RBP22.45■■□□□ 1.18
SDF4-205ENST00000465727 UBN2Q6ZU65 1347 aa22.44■■□□□ 1.18
SDF4-205ENST00000465727 POLR2DO15514 142 aaKnown RBP22.44■■□□□ 1.18
SDF4-205ENST00000465727 RILPL1Q5EBL4 403 aa22.44■■□□□ 1.18
SDF4-205ENST00000465727 ESCO1Q5FWF5 840 aa22.44■■□□□ 1.18
SDF4-205ENST00000465727 SPATA1Q5VX52 437 aa22.44■■□□□ 1.18
SDF4-205ENST00000465727 APTXQ7Z2E3 356 aaKnown RBP22.44■■□□□ 1.18
SDF4-205ENST00000465727 PHKBQ93100 1093 aa22.44■■□□□ 1.18
SDF4-205ENST00000465727 SERTAD1Q9UHV2 236 aa22.44■■□□□ 1.18
SDF4-205ENST00000465727 ITIH6Q6UXX5 1313 aa22.44■■□□□ 1.18
SDF4-205ENST00000465727 PRR29P0C7W0 189 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 RBL2Q08999 1139 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 SAFBQ15424 915 aaKnown RBP eCLIP22.43■■□□□ 1.18
SDF4-205ENST00000465727 FILIP1LQ4L180 1135 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 SGMS1Q86VZ5 419 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 MED15Q96RN5 788 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.43■■□□□ 1.186e-7■□□□□ 8.8
SDF4-205ENST00000465727 ZNF335Q9H4Z2 1342 aaPredicted RBP22.43■■□□□ 1.18
SDF4-205ENST00000465727 ATRNO75882 1429 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 RGPD5Q99666 1765 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 PIP4K2AP48426 406 aaPredicted RBP22.43■■□□□ 1.18
SDF4-205ENST00000465727 VSNL1P62760 191 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 SLC9C2Q5TAH2 1124 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 IFNL2Q8IZJ0 200 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 YY1AP1Q9H869 796 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 ADD3Q9UEY8 706 aaKnown RBP22.43■■□□□ 1.18
SDF4-205ENST00000465727 AXIN2Q9Y2T1 843 aa22.43■■□□□ 1.18
SDF4-205ENST00000465727 CTCFLQ8NI51 663 aaPredicted RBP22.42■■□□□ 1.18
SDF4-205ENST00000465727 NBPF3Q9H094 633 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 CEP131Q9UPN4 1083 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 GOLGA8AA7E2F4 631 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 ACTN4O43707 911 aaKnown RBP22.42■■□□□ 1.18
SDF4-205ENST00000465727 MCM3P25205 808 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 SSRP1Q08945 709 aaKnown RBP22.42■■□□□ 1.18
SDF4-205ENST00000465727 CYB5R4Q7L1T6 521 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 MICU3Q86XE3 530 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 TMTC1Q8IUR5 882 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 PLCD3Q8N3E9 789 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 CCDC102AQ96A19 550 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 XAGE2Q96GT9 111 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 DCAF5Q96JK2 942 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 FOXP1Q9H334 677 aaPredicted RBP22.42■■□□□ 1.18
SDF4-205ENST00000465727 WWC3Q9ULE0 1092 aa22.42■■□□□ 1.18
SDF4-205ENST00000465727 RANBP6O60518 1105 aaKnown RBP22.41■■□□□ 1.18
SDF4-205ENST00000465727 N4BP1O75113 896 aaKnown RBP22.41■■□□□ 1.18
SDF4-205ENST00000465727 MMP1P03956 469 aa22.41■■□□□ 1.18
SDF4-205ENST00000465727 TATP17735 454 aaPredicted RBP22.41■■□□□ 1.18
SDF4-205ENST00000465727 AARSP49588 968 aaKnown RBP eCLIP22.41■■□□□ 1.182e-7■■■■■ 46.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms