RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 EP400NLQ6ZTU2 488 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 C16orf59Q7L2K0 433 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 CCAR1Q8IX12 1150 aaKnown RBP3.53□□□□□ -1.84
USP40-211ENST00000464956 NEK9Q8TD19 979 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 RUBCNQ92622 972 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 FERMT2Q96AC1 680 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 KIF12Q96FN5 646 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 PRMT6Q96LA8 375 aaPredicted RBP3.53□□□□□ -1.84
USP40-211ENST00000464956 TEPSINQ96N21 525 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 TOX2Q96NM4 488 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 APBA2Q99767 749 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 HAUS7Q99871 368 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 TMEM39BQ9GZU3 492 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.53□□□□□ -1.84
USP40-211ENST00000464956 TRMT112Q9UI30 125 aaKnown RBP3.53□□□□□ -1.84
USP40-211ENST00000464956 DAGLAQ9Y4D2 1042 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 LAMB1P07942 1786 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 TAF1P21675 1872 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 UTYO14607 1347 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 A0A0G2JLL6 359 aaPredicted RBP3.52□□□□□ -1.85
USP40-211ENST00000464956 A0A1B0GUL7 405 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 DCDC2BA2VCK2 349 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 ZBBXA8MT70 800 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 PRR5-ARHGAP8B1AHC4 643 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 TCP10L2B9ZVM9 353 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 F8W031 263 aaPredicted RBP3.52□□□□□ -1.85
USP40-211ENST00000464956 KCNQ3O43525 872 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 ARHGAP8P85298 464 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 FAAP100Q0VG06 881 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 SF3B3Q15393 1217 aaKnown RBP3.52□□□□□ -1.85
USP40-211ENST00000464956 SPDYE2Q495Y8 402 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 PPM1JQ5JR12 505 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 TTLL7Q6ZT98 887 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 OTOP2Q7RTS6 562 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 PRRT2Q7Z6L0 340 aaPredicted RBP3.52□□□□□ -1.85
USP40-211ENST00000464956 CDAN1Q8IWY9 1227 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 GPR161Q8N6U8 529 aaKnown RBP3.52□□□□□ -1.85
USP40-211ENST00000464956 CYP2W1Q8TAV3 490 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 ASIC4Q96FT7 647 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 ZNF341Q9BYN7 854 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 IL23AQ9NPF7 189 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 ZNF70Q9UC06 446 aaPredicted RBP3.52□□□□□ -1.85
USP40-211ENST00000464956 PCDHAC2Q9Y5I4 1007 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 DCHS1Q96JQ0 3298 aa3.52□□□□□ -1.85
USP40-211ENST00000464956 MED23Q9ULK4 1368 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 LTBP2Q14767 1821 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 A0A0G2JMZ2 1700 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 ZFHX2Q9C0A1 2572 aaPredicted RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 KIF28PB7ZC32 967 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 STXBP3O00186 592 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 MAPK4P31152 587 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 INPP5BP32019 993 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 RBM25P49756 843 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 SHC2P98077 582 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 LMNB2Q03252 620 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 TAP1Q03518 808 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 SMAD2Q15796 467 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 CCL14Q16627 93 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 MTHFSDQ2M296 383 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 HSP90AB3PQ58FF7 597 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 ANKRD33Q7Z3H0 272 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 TDRD7Q8NHU6 1098 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 SPATA18Q8TC71 538 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 TDRD3Q9H7E2 651 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 CWC22Q9HCG8 908 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 TBX21Q9UL17 535 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 AGTPBP1Q9UPW5 1226 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 RRP7AQ9Y3A4 280 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 FASNP49327 2511 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 TPRP12270 2363 aaKnown RBP3.51□□□□□ -1.85
USP40-211ENST00000464956 MAST2Q6P0Q8 1798 aa3.51□□□□□ -1.85
USP40-211ENST00000464956 NCOR2Q9Y618 2525 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 DDX60Q8IY21 1712 aaKnown RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 MROH7Q68CQ1 1323 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 SALL1Q9NSC2 1324 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 TMEM8BA6NDV4 472 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 GNAT3A8MTJ3 354 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 LPXNO60711 386 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 NTRK1P04629 796 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 MYL6BP14649 208 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 ATP2B2Q01814 1243 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 PABPC4Q13310 644 aaKnown RBP eCLIP3.5□□□□□ -1.85
USP40-211ENST00000464956 SOWAHCQ53LP3 525 aaPredicted RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 NOL9Q5SY16 702 aaKnown RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 ZC3H14Q6PJT7 736 aaKnown RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 NLRP10Q86W26 655 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 PPARGC1BQ86YN6 1023 aaKnown RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 ZFPM1Q8IX07 1006 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 ZGPATQ8N5A5 531 aaKnown RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 TMEM105Q8N8V8 129 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 KDF1Q8NAX2 398 aaPredicted RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 IL17REQ8NFR9 667 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 GDPD5Q8WTR4 605 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 PABPC5Q96DU9 382 aaKnown RBP3.5□□□□□ -1.85
USP40-211ENST00000464956 RIPOR3Q96MK2 946 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 PPP1R12CQ9BZL4 782 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 PICK1Q9NRD5 415 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 TMOD2Q9NZR1 351 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 CTNNA3Q9UI47 895 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 PHF24Q9UPV7 400 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms