RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 MYH2Q9UKX2 1941 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 GPAA1O43292 621 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 CTNND1O60716 968 aaKnown RBP9.23□□□□□ -0.93
USP4-207ENST00000462673 MAP2K2P36507 400 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 TDO2P48775 406 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 DYNLL1P63167 89 aaKnown RBP9.23□□□□□ -0.93
USP4-207ENST00000462673 MAP3K10Q02779 954 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 NFIAQ12857 509 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 PRAMEF18Q5VWM3 479 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 OTUD7BQ6GQQ9 843 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 CWC27Q6UX04 472 aaKnown RBP9.23□□□□□ -0.93
USP4-207ENST00000462673 ADGRA1Q86SQ6 560 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 MAPKAPK5Q8IW41 473 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 KLRG1Q96E93 195 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 TEPSINQ96N21 525 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 BEGAINQ9BUH8 593 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 NAPBQ9H115 298 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 EHD4Q9H223 541 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 RNF39Q9H2S5 420 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 ARMT1Q9H993 441 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 CABP5Q9NP86 173 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 DCP1AQ9NPI6 582 aaPredicted RBP9.23□□□□□ -0.93
USP4-207ENST00000462673 PICK1Q9NRD5 415 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 SWAP70Q9UH65 585 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 SERPINB13Q9UIV8 391 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 FLT1P17948 1338 aa9.23□□□□□ -0.93
USP4-207ENST00000462673 COL2A1P02458 1487 aaPredicted RBP9.22□□□□□ -0.93
USP4-207ENST00000462673 ADAMTSL1Q8N6G6 1762 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 RASSF10A6NK89 507 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 USP2O75604 605 aaPredicted RBP9.22□□□□□ -0.93
USP4-207ENST00000462673 SEC24BO95487 1268 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 TPM2P07951 284 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 XRCC6P12956 609 aaKnown RBP eCLIP9.22□□□□□ -0.93
USP4-207ENST00000462673 PDE4BQ07343 736 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 NOGQ13253 232 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 PRKG1Q13976 671 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 SBK1Q52WX2 424 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 PPP4R3BQ5MIZ7 849 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 LDLRAD1Q5T700 205 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 MIGA2Q7L4E1 593 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 IFNL3Q8IZI9 196 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 LCORLQ8N3X6 602 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 OSBP2Q969R2 916 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 CCDC17Q96LX7 622 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 GBP4Q96PP9 640 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 AS3MTQ9HBK9 375 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 PALD1Q9ULE6 856 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 SCAF8Q9UPN6 1271 aaKnown RBP9.22□□□□□ -0.93
USP4-207ENST00000462673 CNTNAP1P78357 1384 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 ATRNL1Q5VV63 1379 aa9.22□□□□□ -0.93
USP4-207ENST00000462673 ECM29Q5VYK3 1845 aa9.21□□□□□ -0.93
USP4-207ENST00000462673 DDTLA6NHG4 134 aaPredicted RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 USP17L12C9JPN9 530 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 USP17L21D6R901 530 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 UBE2Q2LH0YL09 131 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 TRAK2O60296 914 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 ASNSP08243 561 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 ZBTB48P10074 688 aaPredicted RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 PCP11498 1178 aaKnown RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 CACNB1Q02641 598 aaPredicted RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 PPATQ06203 517 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 CERKLQ49MI3 558 aaPredicted RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 METTL16Q86W50 562 aaKnown RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 ERO1BQ86YB8 467 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 ZNF444Q8N0Y2 327 aaPredicted RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 SDR42E1Q8WUS8 393 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 WRNIP1Q96S55 665 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 C22orf23Q9BZE7 217 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 GRPEL1Q9HAV7 217 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 MKNK2Q9HBH9 465 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 ZNF112Q9UJU3 913 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 RAD50Q92878 1312 aa9.21□□□□□ -0.94
USP4-207ENST00000462673 ZNF646O15015 1829 aaPredicted RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 POLR2AP24928 1970 aaKnown RBP9.21□□□□□ -0.94
USP4-207ENST00000462673 MINDY4BA8MYZ0 360 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 ZNF213O14771 459 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 MAP2K1Q02750 393 aaPredicted RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 SREBF2Q12772 1141 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 NMIQ13287 307 aaPredicted RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 HSP90AA2PQ14568 343 aaPredicted RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 ALX1Q15699 326 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 SKOR2Q2VWA4 1001 aaPredicted RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 C12orf60Q5U649 245 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 ZFPM1Q8IX07 1006 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP4-207ENST00000462673 TRIM44Q96DX7 344 aaPredicted RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 DSCC1Q9BVC3 393 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 RNF41Q9H4P4 317 aaPredicted RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 DDX4Q9NQI0 724 aaKnown RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 SAP30BPQ9UHR5 308 aaKnown RBP9.2□□□□□ -0.94
USP4-207ENST00000462673 CCDC171Q6TFL3 1326 aa9.2□□□□□ -0.94
USP4-207ENST00000462673 MANSC4A6NHS7 340 aaPredicted RBP9.19□□□□□ -0.94
USP4-207ENST00000462673 GSG1L2A8MUP6 293 aa9.19□□□□□ -0.94
USP4-207ENST00000462673 CXCL11O14625 94 aa9.19□□□□□ -0.94
USP4-207ENST00000462673 CDC45O75419 566 aa9.19□□□□□ -0.94
USP4-207ENST00000462673 ALDH1A1P00352 501 aa9.19□□□□□ -0.94
USP4-207ENST00000462673 HSPD1P10809 573 aaKnown RBP9.19□□□□□ -0.94
USP4-207ENST00000462673 GSPT1P15170 499 aaKnown RBP9.19□□□□□ -0.94
USP4-207ENST00000462673 CHMLP26374 656 aa9.19□□□□□ -0.94
USP4-207ENST00000462673 CAP2P40123 477 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms